Gene Information

Name : Psta_4343 (Psta_4343)
Accession : YP_003372850.1
Strain : Pirellula staleyi DSM 6068
Genome accession: NC_013720
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.15
Position : 5668064 - 5669431 bp
Length : 1368 bp
Strand : +
Note : KEGG: pca:Pcar_1189 flagellum-specific ATP synthase FliI; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase

DNA sequence :
ATGATGAACGACTATATCTCACAGCTCGATTCGATCGTCACTTCACGCATCTCGGGAAGTATTGTCCGAACCGAAGGCTT
GACCGCGGCAGCCGCTGGATTTCCGGCTCCCCTTGGCAGCCTCGCCCTGATCGAACGACAGGCTGGTGCGCCGGTCGAAG
CAGAAGTAATTGGGTTTCGCGATAACCTGACGCTGCTGTTTCCACTCGGTGATGTCATCGGAATTCGCCAAGGAAATCGT
GTGACCTTGGCTCGCTCGACACGCAGCGTGCGAGTCGGAAATCAGCTTCTCGGACGCGTGATCGACGCGCGGGGTCGAGT
GATCGATAACAAGCCAGCCCCTGTGCTCGCCGATCGTGTGCCCCTCGATCGCAAGCCACCTGCTGCCACATCGCGGCCAC
GTATCGACACCACTTTCTCCACAGGAGTGCGGGCGATTGATGGTCTGCTGACCTGCGGCGTGGGACAGCGTATCGGTGTG
TTTGCCGGATCGGGCGTGGGCAAAAGTGTGACGCTCGGCATGATGGCAAAGTACTCGTCGGCCGACGTGATTGTGATCGG
ACTCATTGGGGAGCGAGGTCGCGAAGTCAACGAATTTCTCGAGCGTGATCTTGGTCCCACTGGGCTCGCGCGGAGCGTCT
GTGTCGTCGCAACAAGCGATGAGCCTGCGATCATGCGCGTGCAAGCTGCTTCGACAGCCACCGCGGTTGCCGAATACTTT
CGGGACCAAGGGAAGAACGTGCTGCTGATGATGGACTCGCTCACACGTTTTGCGCTCGCGCAGCGCGAGATCGGGCTAGC
CGCTGGCGAACCACCGACAACGCGCGGATATCCACCGAGCGTGTTTGCGCTACTGCCGCGACTCGTGGAGCGCGCGGGGC
GGACGCCGCAAGGGAGCATCACCGCCATTTATAGCGTGCTGGTTGAAGGGGATGACGTCAACGAACCGGTGAGCGATACC
GTTCGCGGTTTGCTCGACGGACACGTGATTCTTTCACGAAAACTGGCCGCACAGTCGCACTATCCAGCGATTGAAGTGCT
GGGAAGTATCAGCCGACTCTTCACCGAAATCACAACACCGCAGCAGCGAAGTGCAGCAGCCATTGTGCGCGAACTGCTGT
CGGCCTATCGCGAACATGAAGACCTGATCTCGATCGGCGCCTACCGAACCGGTGCGAATCCCACGGTAGATACCGCGATC
GCAATGCGGGGCGAGATTCTACAGTTCCTGAAACAAAGCATCGACGAAAAAACCGATGTCGCGAAGGCCAGCGAAGAGCT
GCTGAAACTCGCGATGCGATGCCAGCAGCCTCGCAAAGCAGCGGTAGCACAGGCCCCAGTCATGCAACAACCACCACGTC
GCAATTAA

Protein sequence :
MMNDYISQLDSIVTSRISGSIVRTEGLTAAAAGFPAPLGSLALIERQAGAPVEAEVIGFRDNLTLLFPLGDVIGIRQGNR
VTLARSTRSVRVGNQLLGRVIDARGRVIDNKPAPVLADRVPLDRKPPAATSRPRIDTTFSTGVRAIDGLLTCGVGQRIGV
FAGSGVGKSVTLGMMAKYSSADVIVIGLIGERGREVNEFLERDLGPTGLARSVCVVATSDEPAIMRVQAASTATAVAEYF
RDQGKNVLLMMDSLTRFALAQREIGLAAGEPPTTRGYPPSVFALLPRLVERAGRTPQGSITAIYSVLVEGDDVNEPVSDT
VRGLLDGHVILSRKLAAQSHYPAIEVLGSISRLFTEITTPQQRSAAAIVRELLSAYREHEDLISIGAYRTGANPTVDTAI
AMRGEILQFLKQSIDEKTDVAKASEELLKLAMRCQQPRKAAVAQAPVMQQPPRRN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 5e-93 56
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 1e-84 52
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-86 51
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 2e-86 51
escN AAC38383.1 EscN Virulence LEE Protein 9e-86 51
ECs4568 NP_312595.1 EscN Virulence LEE Protein 9e-86 51
escN CAI43874.1 EscN protein Virulence LEE Protein 8e-86 51
escN AAC31513.1 L0034 Virulence LEE Protein 6e-86 51
escN YP_003236088.1 translocator EscN Virulence LEE Protein 3e-85 51
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 6e-86 51
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-85 51
escN YP_003223475.1 translocator EscN Virulence LEE Protein 1e-85 51
escN NP_290268.1 hypothetical protein Virulence LEE Protein 9e-86 51
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 6e-80 51
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-80 51
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-80 51
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-80 51
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-80 51
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 7e-88 50
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 7e-88 50
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-86 50
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-87 50
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-88 50
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-88 50
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 4e-87 50
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-84 50
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-84 50
escN AAL57542.1 EscN Virulence LEE Protein 2e-85 50
escN CAC81862.1 EscN protein Virulence LEE II Protein 1e-85 50
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-84 50
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-79 50
escN AAK26715.1 EscN Virulence LEE Protein 2e-85 50
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 1e-84 49
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 1e-80 49
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 1e-80 49
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 4e-81 49
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-74 47
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 1e-74 47
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-74 47
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-74 47
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 6e-70 46
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 6e-74 46
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 3e-76 46
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 1e-71 45
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 1e-71 45
invC AAS66861.1 InvC Not tested SSR-2 Protein 9e-73 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 5e-75 44
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 4e-75 44
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 2e-74 44
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 3e-69 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG0192 Protein 1e-96 56
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG0390 Protein 2e-90 54
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG0730 Protein 5e-86 51
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG0812 Protein 4e-86 51
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG0515 Protein 8e-81 51
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG2499 Protein 2e-86 51
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG0048 Protein 2e-91 50
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG2144 Protein 8e-93 49
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG2331 Protein 1e-90 48
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG1254 Protein 3e-93 48
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG0555 Protein 4e-75 47
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG2459 Protein 4e-74 45
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG1008 Protein 4e-68 45
Psta_4343 YP_003372850.1 FliI/YscN family ATPase VFG1778 Protein 1e-71 44