Gene Information

Name : Psta_1884 (Psta_1884)
Accession : YP_003370418.1
Strain : Pirellula staleyi DSM 6068
Genome accession: NC_013720
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 2389985 - 2392543 bp
Length : 2559 bp
Strand : +
Note : PFAM: ATPase AAA; ATPase AAA; UvrB/UvrC protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: bsu:BSU00860 class III stress response- related ATPase

DNA sequence :
ATGTATGAACGTTTTACGGACCGCGCTCGCAAGGTTATGCAACTTGCGAATCAAGAAGCACAGCGGTTCAACCACGAATA
CATCGGCACCGAGCACATCCTGCTTGGTCTGGTGAAAGAAGGTAGTGGTGTTGCCGCCAACGTGCTGAAGAATCTTGATG
TCGATTTGCGCAAGATTCGCCTCGAAGTGGAAAAGCTCGTCCAAAGTGGCCCCGAAATGGTCACCATGGGCAAGCTGCCA
CAAACGCCGCGTGCCAAAAAGGTCATCGAATATTCGATGGAAGAGGCACGCAACCTGAACCACAACTACGTCGGCACCGA
GCACATCCTGCTGGGACTTTTGCGCGAGCAAGAGGGTGTCGCCGCCCAAGTGCTGATGAACCTCGGCCTGAAACTCGAAG
AAGTTCGCGAAGAGGTGCTGAACCTCCTCGGTCACGGACTCGAAGGGGAATCGACCGGCGAACGTGGCGGTCGCGAAGGA
GTCGGTGTGGGTGGTCAGTCGGGCGAACAGCAAGCCGCTGGTCGGGGTAGCAAAAGCAAAACCCCTGCGCTCGACAGCTT
TGGCCGCGATCTCACCGAACTCGCTCGTCAAAATAAACTCGATCCGGTCATCGGCCGCGAACGCGAAATCGAACGGGCCA
TCCAGGTCCTCTGCCGCCGGACGAAAAACAATCCTGTACTGCTCGGTGAAGCAGGTGTCGGCAAAACGGCCATCGTCGAA
GGCTTCGCCCAGCGCGTGGTCGCCGGCAGTGTTCCTGAAATTCTGGCCGACAAACGAATCGTGGTCCTCGACCTCGCCAT
GATGGTCGCTGGCACCAAGTATCGCGGTCAGTTCGAAGAACGTATCAAGGCGGTGATGAACGAAGTTCGTCGCGCTCGCA
ACACGATCTTGTTCATCGACGAACTCCATACCCTCGTCGGAGCCGGTGGTGCTGAAGGTGCCATCGACGCCGCGAACGTT
CTGAAGCCAGCCCTCGCACGTGGCGAAATCCAGTGCATCGGCGCGACGACGCTCGACGAATACCGCAAGTACATCGAAAA
AGATGCCGCTCTTGCGCGTCGTTTCCAAGAGATCATTGTCGAACCGACGAGCAAGGACGAAACGGTCGAGATCCTCAAGG
GTCTGCGCGAGAAGTACGAAGACCACCATCGCGTGCAAATCACCGACGATGCCCTCGTCGCTGCTGCCGAGTACAGCGAA
CGCTATATCACCGCTCGCTGCTTGCCCGATAAGGCGATCGACGTCATCGACGAAGCAGGCGCTCGTGTCCGTCTGCGGGC
CATGACTCGTCCACCAGATCTCAAAGAGATCGACGACGAAGTCGAACGCCTCAACAAAGAAAAAGAAGAAGCTGTTGCCA
ATCAAGATTTTGAAAAGGCAGCCGCTCTTCGCGATCAAGCCGACAAGCTGAAGCGCAAGAAAGACAACATCACCAAGGAA
TGGCGCGACAAATCGCGCGAGACCGATGGTGTGGTCGACGAAGAAGTGATTGCCGAAGTGGTCAGCAAGATGACCGGCAT
TCCGCTCACGCGCATGAGCACCGAAGACAGCTTGCGTCTGATGAAGATGGAAGAAGAGCTGCACAAGAAGGTGATCAGCC
AAGATCAGGCCGTCACCGCGATTGCCAAGGCGGTCCGTCGTACGCGGAGCGGTCTCAAAGACCCACGTCGTCCTGCCGGC
TGCTTTGTGTTCGCTGGTCCGACCGGTGTTGGTAAGACGCTGCTGGCCAAGGCACTCGCCGAATTCATGTTTGGCGATGC
CGACGCGCTCATTCAAATCGATATGAGCGAGTACATGGAAAAGCACAACGTCAGCCGACTGATCGGTGCTCCTCCCGGCT
ATGTGGGCTACGAAGAAGGTGGCCAGCTGACCGAGAAGATCCGTCGTCGTCCTTACGCGGTGGTGCTGCTCGACGAAATC
GAAAAAGCCCATCCCGACGTCTTCAATACCCTGCTGCAAGTGATGGAAGAAGGCCGTTTGACCGACAGCTTCGGTCGCCG
CGTCGACTTCCGCAACGTCATCCTCATCATGACGACCAACGCAGGTGCTGAAGCGATCAAGAACGAATCGGACTTTGGTT
TCCGCCAAGGTGATACCGACGCTTCGTACGACGGCATGAAGGCTCGCGTGATGGACCGCATCGAACGTGTGTTCCGTCCG
GAGTTCCTCAACCGTCTCGACGACGTGATCGTGTTCCAGCACCTGACCAAGGACAACCTGAAGCTGGTGATCGATCTCGA
ATTGCTCAAGGTTCGTCAACGTCTGGCCGAGCGTGGTTTGCAGCTCGAACTGACCGACACGGCCAAAGAGTTCATCATCA
AGAAGGGTTCGAATACCGATTTCGGTGCTCGTCCGCTTCGTCGCGCGGTGGAAAATTACATCGAAGATCCGCTGGCCGAA
GAACTCCTCAAGGGAGAGTTCCAAGGAAAGGATTTGATCCAAGTCGACGCCATCCGCGACGACGAAGGAAAACTCCGCCG
GCTCGACTTCAAGGGTGTCACCACCTCAGCTGCTCCCGTCGCCGCCGCTCCCAGCAGCAGCGAATCACAGCCGAGCTAA

Protein sequence :
MYERFTDRARKVMQLANQEAQRFNHEYIGTEHILLGLVKEGSGVAANVLKNLDVDLRKIRLEVEKLVQSGPEMVTMGKLP
QTPRAKKVIEYSMEEARNLNHNYVGTEHILLGLLREQEGVAAQVLMNLGLKLEEVREEVLNLLGHGLEGESTGERGGREG
VGVGGQSGEQQAAGRGSKSKTPALDSFGRDLTELARQNKLDPVIGREREIERAIQVLCRRTKNNPVLLGEAGVGKTAIVE
GFAQRVVAGSVPEILADKRIVVLDLAMMVAGTKYRGQFEERIKAVMNEVRRARNTILFIDELHTLVGAGGAEGAIDAANV
LKPALARGEIQCIGATTLDEYRKYIEKDAALARRFQEIIVEPTSKDETVEILKGLREKYEDHHRVQITDDALVAAAEYSE
RYITARCLPDKAIDVIDEAGARVRLRAMTRPPDLKEIDDEVERLNKEKEEAVANQDFEKAAALRDQADKLKRKKDNITKE
WRDKSRETDGVVDEEVIAEVVSKMTGIPLTRMSTEDSLRLMKMEEELHKKVISQDQAVTAIAKAVRRTRSGLKDPRRPAG
CFVFAGPTGVGKTLLAKALAEFMFGDADALIQIDMSEYMEKHNVSRLIGAPPGYVGYEEGGQLTEKIRRRPYAVVLLDEI
EKAHPDVFNTLLQVMEEGRLTDSFGRRVDFRNVILIMTTNAGAEAIKNESDFGFRQGDTDASYDGMKARVMDRIERVFRP
EFLNRLDDVIVFQHLTKDNLKLVIDLELLKVRQRLAERGLQLELTDTAKEFIIKKGSNTDFGARPLRRAVENYIEDPLAE
ELLKGEFQGKDLIQVDAIRDDEGKLRRLDFKGVTTSAAPVAAAPSSSESQPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psta_1884 YP_003370418.1 ATPase AAA VFG0079 Protein 0.0 58
Psta_1884 YP_003370418.1 ATPase AAA VFG0080 Protein 4e-148 50