Gene Information

Name : ramA (ROD_05711)
Accession : YP_003364203.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Resistance
Product : transcriptional activator RamA
Function : -
COG functional category : K : Transcription
COG ID : COG4977
EC number : -
Position : 633175 - 633516 bp
Length : 342 bp
Strand : +
Note : -

DNA sequence : 
ATGACCATTTCTGCACAGGTTATCGACACCATTGTCGAATGGATTGATGAAAATTTAAATCAGCCGTTACGCATTGACGA
TATCGCGCGCCATGCGGGCTACTCCAAATGGCATCTGCAGCGTCTTTTTATGCAGTACAAAGGGGAGAGTCTTGGGCGCT
ACATTCGCGAGCGCAAGCTGCTGCTGGCGGCGCGGGATCTGCGTGAATCGGACGAAAAAGTGTATGACATTTGCCTGCGT
TACGGCTTTGACTCGCAGCAGACGTTTACCCGCATCTTCACCCGCACCTTCAACCAGCCGCCGGGCGCCTACCGCAAAGA
GAACCATAGCCGGGCGCACTGA

Protein sequence : 
MTISAQVIDTIVEWIDENLNQPLRIDDIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDEKVYDICLR
YGFDSQQTFTRIFTRTFNQPPGAYRKENHSRAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 7e-20 51
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 1e-16 45
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 1e-16 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ramA YP_003364203.1 transcriptional activator RamA CP001138.1.gene612.p Protein 4e-41 91
ramA YP_003364203.1 transcriptional activator RamA CP001138.1.gene4488. Protein 2e-20 51
ramA YP_003364203.1 transcriptional activator RamA CP001918.1.gene327.p Protein 2e-20 50
ramA YP_003364203.1 transcriptional activator RamA CP000647.1.gene4499. Protein 3e-20 50
ramA YP_003364203.1 transcriptional activator RamA CP001918.1.gene2033. Protein 1e-18 49
ramA YP_003364203.1 transcriptional activator RamA CP000647.1.gene1624. Protein 2e-18 49
ramA YP_003364203.1 transcriptional activator RamA NC_002695.1.914293.p Protein 2e-19 48
ramA YP_003364203.1 transcriptional activator RamA BAC0371 Protein 2e-19 48
ramA YP_003364203.1 transcriptional activator RamA CP001138.1.gene1637. Protein 1e-18 48
ramA YP_003364203.1 transcriptional activator RamA CP000034.1.gene4505. Protein 4e-19 47
ramA YP_003364203.1 transcriptional activator RamA NC_002695.1.917339.p Protein 6e-19 47
ramA YP_003364203.1 transcriptional activator RamA BAC0560 Protein 6e-19 47
ramA YP_003364203.1 transcriptional activator RamA CP000034.1.gene1596. Protein 5e-19 47
ramA YP_003364203.1 transcriptional activator RamA NC_010558.1.6276025. Protein 6e-17 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ramA YP_003364203.1 transcriptional activator RamA VFG0585 Protein 2e-20 51
ramA YP_003364203.1 transcriptional activator RamA VFG1038 Protein 5e-17 45