Gene Information

Name : ROD_05501 (ROD_05501)
Accession : YP_003364184.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 612089 - 612775 bp
Length : 687 bp
Strand : +
Note : -

DNA sequence : 
ATGCCAGCGGAAAACATTGTTGAAGTTCACCATCTTAAGAAGTCCGTCGGTCAGGGGGAGCATGAGCTTTCCATCCTTAC
CGGAGTTGAACTGGTTGTCAAACGCGCCGAAACCATCGCGCTGATTGGCGAGTCGGGTTCAGGCAAATCAACGCTGCTGG
CGATCCTTGCCGGACTTGATGACGGCAGCAGCGGCGAAGTCAGCCTCGTCGGCAAACCGCTGCACCGCATGGATGAAGAG
GCGCGCGCCCAGCTGCGCGCGCAGCACGTCGGCTTTGTTTTCCAGTCGTTTATGCTGATCCCGACGCTGAACGCGCTGGA
AAACGTTGAGCTGCCTGCGCTGTTGCGCGGAGAACACAGCGGCCAAAGTCGGGAAGGGGCGAAAGCGCTGCTCGAACAGC
TGGGGCTGGGTAAACGGCTTGATCATCTTCCGGCGCAGCTTTCCGGCGGCGAACAGCAGCGCGTGGCGCTGGCGCGGGCG
TTTAATGGTCGTCCCGAAGTGCTGTTTGCCGATGAACCGACCGGCAACCTCGATCGCCAGACCGGCGATAAAATTGCCGA
TCTGCTGTTTTCACTGAATCGGGAACACGGCACGACGCTGATTCTGGTGACCCACGATCCGCAGCTGGCGGCGCGTTGCG
ACAGGCGTTTGCGTCTGGTGAACGGGCTGTTGCAGGAGGAGGTATGA

Protein sequence : 
MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRAETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGKPLHRMDEE
ARAQLRAQHVGFVFQSFMLIPTLNALENVELPALLRGEHSGQSREGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA
FNGRPEVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDPQLAARCDRRLRLVNGLLQEEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-32 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROD_05501 YP_003364184.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-39 43
ROD_05501 YP_003364184.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-35 43