|
Name : ROD_50111 (ROD_50111) Accession : YP_003368372.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Unknown Product : IS679 transposase C Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3436 EC number : - Position : 5263948 - 5265519 bp Length : 1572 bp Strand : - Note : - DNA sequence : ATGGACACCTCACTTGCTCATGAGAATGCCCGCCTGCGGGCGCTGTTGCAGACGCAACAGGACACCATCCGCCAGATGGC CGAATACAACCGCCTGCTCTCACTGCGGGTGGCGGCTTATGCTTCCGAAATCAACCGGCTGAAGGCGCTGGTTGCAAAAC TACAGCGCATGCAGTTCGGTAAAAGCTCAGAAAAACTTCGCGCAAAAACCGAACGACAGATACAGGAAGCACAGGAGCGA ATCAGCGCACTTCAGGAAGAAATGGCGGAAACGCTGGGTGAGCAATATGACCCGGCACTGCCATCCGCCCTGCGCCAGTC TTCAGCCCGTAAACCGTTACCGGCCTCACTTCCCCGTGAAACCCGGGTCATCCGGCCGGAAGAGGAATGCTGTCCGGCCT GTGGTGGTGAACTCAGTCCACTGGGATGTGATGTGTCAGAGCAACTGGAGCTTATCAGCAGCGCCTTTAAGGTTATCGAA ACACAACGTCCGAAACTGACCTGTTGCCGTTGTGACCATATCGTGCAGGCGCCGGTGCCTTCAAAACCCATTGTACGCAG CTATGCCGGAGCGGGGCTTCTGGCCCATGTTGTCACCGGGAAATATGCAGACCATCTGCCGTTATACCGCCAGTCAGAAA TATACCGTCGTCAGGGCGTGGAGCTGAGTCGTGCCACGCTGGGGCGCTGGACTGGTGCCGTTGCTGAACTGCTGGAGCCA CTGTATGACGTCCTGCGCCAGTATGTGCTGATGCCCGGTAAAGTCCATGCCGATGATATCCCCGTCCCGGTCCAGGAGCC GGGCAGCGGTAAAACCCGGACAGCCCGGCTGTGGGTCTACGTCCGTGATGACCGTAACGCCGGTTCACAGATGCCTGCGG CGGTCTGGTTCGCGTACAGCCCGGACCGGAAAGGTATCCATCCACAAAATCACCTGGCCGGTTACAGCGGAGTGCTTCAG GCCGATGCTTACGGTGGCTACCGGGCGTTATACGAATCCGGCAGAATAACGGAAGCCGCGTGTATGGCCCATGCCCGGAG AAAAATCCACGATGTGCATGCAAGAGCGCCAACCGATATCACCACGGAAGCCCTGCAGCGTATCGGTGAACTGTATGCCA TCGAGGCAGAAGTCCGGGGATGTTCAGCAGAACAGCGTCTGGCAGCAAGAAAAGCCAGAGCTGTGCCACTGATGCAGTCA CTGTATGACTGGATACAGACTCAGATGAAAACACTGTCGCGTCACTCGGATACGGCAAAAGCGTTCGCATACCTGCTGAA ACAGTGGGAGGCCCTGAACGTGTACTGCAGTAATGGCTGGGTGGAAATCGACAACAACATCGCAGAGAACGCCTTACGGG GAGTGGCCGTGGGCCGGAAAAACTGGCTGTTCGCAGGTTCCGACAGCGGTGGCGAACATGCGGCGGTGTTGTACTCGCTG ATCGGCACATGCCGTCTGAACAATGTGGAGCCAGAAAAATGGCTGCGCTACGTCATTGAACATATCCAGGACTGGCCGGC AAACCGGGTACGCGATCTGTTGCCCAGGAAAGTTGATCTGAGCTCTCAGTAA Protein sequence : MDTSLAHENARLRALLQTQQDTIRQMAEYNRLLSLRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQER ISALQEEMAETLGEQYDPALPSALRQSSARKPLPASLPRETRVIRPEEECCPACGGELSPLGCDVSEQLELISSAFKVIE TQRPKLTCCRCDHIVQAPVPSKPIVRSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVELSRATLGRWTGAVAELLEP LYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPAAVWFAYSPDRKGIHPQNHLAGYSGVLQ ADAYGGYRALYESGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAVPLMQS LYDWIQTQMKTLSRHSDTAKAFAYLLKQWEALNVYCSNGWVEIDNNIAENALRGVAVGRKNWLFAGSDSGGEHAAVLYSL IGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPRKVDLSSQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec53 | AAW51736.1 | Aec53 | Not tested | AGI-3 | Protein | 0.0 | 98 |
| c3563 | NP_755438.1 | hypothetical protein | Not tested | PAI I CFT073 | Protein | 5e-118 | 67 |
| ECO103_3554 | YP_003223421.1 | hypothetical protein | Not tested | LEE | Protein | 3e-145 | 64 |
| Z4317 | NP_289543.1 | hypothetical protein | Not tested | OI-122 | Protein | 2e-145 | 64 |
| st57 | CAC81895.1 | ST57 protein | Not tested | LEE II | Protein | 2e-129 | 61 |
| tnp | AEA34686.1 | transposase | Not tested | Not named | Protein | 8e-135 | 59 |
| unnamed | CAC39285.1 | hypothetical protein | Not tested | LPA | Protein | 1e-133 | 58 |
| Z5098 | NP_290249.1 | prophage-associated protein | Not tested | LEE | Protein | 2e-133 | 58 |
| unnamed | AAC31494.1 | L0015 | Not tested | LEE | Protein | 1e-133 | 58 |
| Z1131 | NP_286666.1 | hypothetical protein | Not tested | TAI | Protein | 1e-132 | 58 |
| Z1570 | NP_287074.1 | hypothetical protein | Not tested | TAI | Protein | 1e-132 | 58 |
| ECs4547 | NP_312574.1 | hypothetical protein | Not tested | LEE | Protein | 4e-133 | 58 |
| unnamed | ACU09439.1 | IS66 family element transposase | Not tested | LEE | Protein | 3e-133 | 58 |
| Z4337 | NP_289562.1 | hypothetical protein | Not tested | OI-122 | Protein | 2e-133 | 58 |
| unnamed | AAL57570.1 | unknown | Not tested | LEE | Protein | 9e-134 | 58 |
| unnamed | CAI43806.1 | hypothetical protein | Not tested | LEE | Protein | 3e-133 | 58 |
| unnamed | AAL08460.1 | unknown | Not tested | SRL | Protein | 1e-94 | 56 |
| Z4340 | NP_289564.1 | hypothetical protein | Not tested | OI-122 | Protein | 2e-112 | 54 |
| BCAM0248 | YP_002232880.1 | putative transposase | Not tested | BcenGI11 | Protein | 1e-123 | 54 |
| Z1600 | NP_287104.1 | hypothetical protein | Not tested | TAI | Protein | 6e-112 | 53 |
| Z1161 | NP_286696.1 | hypothetical protein | Not tested | TAI | Protein | 6e-112 | 53 |
| tnp | AEA34687.1 | IS66 family transposase | Not tested | Not named | Protein | 5e-73 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ROD_50111 | YP_003368372.1 | IS679 transposase C | VFG1700 | Protein | 2e-118 | 67 |
| ROD_50111 | YP_003368372.1 | IS679 transposase C | VFG0793 | Protein | 6e-134 | 58 |
| ROD_50111 | YP_003368372.1 | IS679 transposase C | VFG1051 | Protein | 7e-95 | 56 |
| ROD_50111 | YP_003368372.1 | IS679 transposase C | VFG1736 | Protein | 1e-92 | 54 |
