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Name : ROD_50001 (ROD_50001) Accession : YP_003368363.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : virulence-related outer membrane protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3637 EC number : - Position : 5252525 - 5253100 bp Length : 576 bp Strand : + Note : similar to PagC DNA sequence : ATGAAAAAACTCGTTGTAATTTCAGTAATGATATTATCTGTTATGAGTGGTTCAACACTGGCTGATAATCATACGCTATC GGCTGGTTATGCTCAGAGTAAGGTACAGGACTTTAAGAATATTAAAGGAGTGAATCTGCAATATCGATATGAGTGGGATT CTCCGGTCAGTGTTGTCGGGAGTTTTTCGTATATGAAAGGTGACTGGTCGGACAGTCATCGCGATGAAGCTGACGATTTT TACAGACAGCAGGCTGATATTAAATATTATTCATTTCTCGCAGGCCCAGCTTATCGTCTGAATGACTATATCAGTTTTTA TGGTTTGGTGGGGATATCTCATACTAAAGCGAAGGGGGATTATGAGTGGAGAAACAGTGTGGGTGCTGATGAGTCTGATG GATATTTAAGTGAGTCTGTATCCAAAAAATCCACTGATTTTGCTTATGCAGCTGGTGTTATTATTAATCCGAGGGGCAAT ATGTCTGTAAATGTTGGGTATGAGGGAACTAAAGCAGATATATGTGGAAAACATTCGGTCAATGGATTTACTGTTGGAGT TGGTTATCGTTTTTAA Protein sequence : MKKLVVISVMILSVMSGSTLADNHTLSAGYAQSKVQDFKNIKGVNLQYRYEWDSPVSVVGSFSYMKGDWSDSHRDEADDF YRQQADIKYYSFLAGPAYRLNDYISFYGLVGISHTKAKGDYEWRNSVGADESDGYLSESVSKKSTDFAYAAGVIINPRGN MSVNVGYEGTKADICGKHSVNGFTVGVGYRF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ADD91732.1 | putative PagC-like membrane protein | Not tested | PAI-I AL862 | Protein | 2e-73 | 99 |
| pagC | AGI37340.1 | PagC | Virulence | OI-122 | Protein | 7e-62 | 98 |
| pagC | AGI37341.1 | PagC | Virulence | OI-122 | Protein | 4e-61 | 98 |
| pagC | AGI37347.1 | PagC | Virulence | OI-122 | Protein | 7e-62 | 98 |
| pagC | AGI37349.1 | PagC | Virulence | OI-122 | Protein | 4e-61 | 98 |
| pagC | AGI37352.1 | PagC | Virulence | OI-122 | Protein | 4e-61 | 98 |
| Z4321 | NP_289546.1 | PagC-like membrane protein | Not tested | OI-122 | Protein | 1e-72 | 98 |
| Z4321 | AAQ19134.1 | putative PagC-like membrane protein | Not tested | PAI I CL3 | Protein | 5e-72 | 98 |
| pagC | AGI37337.1 | PagC | Virulence | OI-122 | Protein | 3e-61 | 97 |
| pagC | AGI37342.1 | PagC | Virulence | OI-122 | Protein | 3e-61 | 97 |
| pagC | AGI37344.1 | PagC | Virulence | OI-122 | Protein | 3e-61 | 97 |
| pagC | AGI37348.1 | PagC | Virulence | OI-122 | Protein | 1e-60 | 97 |
| pagC | AGI37346.1 | PagC | Virulence | OI-122 | Protein | 3e-61 | 97 |
| pagC | AGI37343.1 | PagC | Virulence | OI-122 | Protein | 5e-61 | 97 |
| pagC | AGI37350.1 | PagC | Virulence | OI-122 | Protein | 3e-61 | 97 |
| pagC | AGI37353.1 | PagC | Virulence | OI-122 | Protein | 5e-61 | 97 |
| pagC | AGI37351.1 | PagC | Virulence | OI-122 | Protein | 1e-60 | 96 |
| pagC | YP_216243.1 | PhoP regulated protein: reduced macrophage survival | Not tested | SPI-11 | Protein | 1e-27 | 47 |
