Gene Information

Name : ROD_49841 (ROD_49841)
Accession : YP_003368349.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5234302 - 5234691 bp
Length : 390 bp
Strand : +
Note : -

DNA sequence :
ATGATTATGTACGCAAAATCCTTTATTGCATTTGATGGCAACGGACGTCTGACCGGTGCCCGTACCGCACAGACTGCGCC
ATATGATCGTTATACCTGTCATCTTTGTGGCAGTTCGCTCAGATATCACCCGCAATACGACACTGAACGTCCCTGGTTTG
AACACACTGACGAAGGGCTGACTGAGCACGGTCATGAGTGCCCTTATGTCAGACCGGAGCGCAGAGAAATACTGTTGATT
AAACGCTTACAGCAATGGGTACCGGATGCTTTACCCGTGGTGCGTAAAGCCCACCGGCACTGCAGACAATGTCACCACGA
TTATTATGGGGAACGCTATTGTACACACTGTCATACAGGGCGTTTCAGTGAGGAAGTAGTGGCAGGATGA

Protein sequence :
MIMYAKSFIAFDGNGRLTGARTAQTAPYDRYTCHLCGSSLRYHPQYDTERPWFEHTDEGLTEHGHECPYVRPERREILLI
KRLQQWVPDALPVVRKAHRHCRQCHHDYYGERYCTHCHTGRFSEEVVAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec60 AAW51743.1 Aec60 Not tested AGI-3 Protein 3e-52 90
S3186 NP_838469.1 hypothetical protein Not tested SHI-1 Protein 2e-50 89
SF2981 NP_708755.1 hypothetical protein Not tested SHI-1 Protein 2e-50 89
unnamed AAK00467.1 unknown Not tested SHI-1 Protein 1e-50 89
unnamed ADD91715.1 hypothetical protein Not tested PAI-I AL862 Protein 8e-49 89
unnamed CAE85181.1 hypothetical protein Not tested PAI V 536 Protein 5e-49 87
unnamed CAI43833.1 hypothetical protein Not tested LEE Protein 2e-49 87
APECO1_1083 YP_853103.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 3e-48 87
ECO103_3572 YP_003223433.1 hypothetical protein Not tested LEE Protein 2e-49 86

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROD_49841 YP_003368349.1 hypothetical protein VFG0645 Protein 6e-51 89