Gene Information

Name : ROD_49751 (ROD_49751)
Accession : YP_003368340.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : GTP-binding protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG3596
EC number : -
Position : 5227553 - 5228464 bp
Length : 912 bp
Strand : -
Note : -

DNA sequence :
GTGCGCGGGGTTTTGTCTTTTTTCACCGGGAATACATGTATGAATCCGTCTGATGCCATTGAGGCGATTGAAAAACCACT
TTCTTCCCTGCCTTACTCGCTTTCCCGTCACATCCTGGAACATCTGCGTAAACTCACTCACCACGAACCCGTGATTGGCA
TTATGGGTAAAAGCGGGGCCGGTAAATCCTCACTCTGTAATGCACTGTTTCAGGGGGAGGTCACCCCGGTCAGTGATGTT
CACGCCGGCACCCGGGAAGTGCAGCGCTTCCGTCTGAGTGGCCATGGTCACAGCATGGTTATCACTGACCTGCCCGGGGT
GGGCGAGAGCCGGGACAGGGATGCAGAGTATGAAGCCCTGTACCGTGACATTCTGCCTGAACTTGACCTGGTACTGTGGC
TGATTAAAGCCGATGACCGTGCCCTGTCTGTGGATGAGTATTTCTGGCGACACATCCTGCACCGGGGACATCAGCAAGTG
CTGTTTGTGGTGACGCAGGCCGACAAAACGGAGCCCTGCCATGAATGGGATATGGCCGGTATTCAGCCTTCTCCCGCACA
GGCACAGAATATTCGCGAAAAAACGGAGGCGGTATTCCGTCTGTTCCGGCCCGTACATCCGGTTGTTGCCGTATCGGCCC
GCACCGGCTGGGAACTGGATACGCTGGTCAGTGCGCTCATGACAGCGCTTCCCGACCATGCCGCCAGTCCCCTGATGACC
CGCCTGCAGGACGAGCTGCGCACGGAATCTGTCCGGTCTCAGGCCCGTGAACAGTTTACCGGCGCGGTGGACCGGATATT
TGACACGGCGGAGAGCGTCTGTATTGCCTCTGTTGCACGCACGGTTCTGCGAGCCGTCCGTGACACGGTGGTCTCTGTTG
CCCGCGCTGTATGGAACTGGATTTTCTTCTGA

Protein sequence :
MRGVLSFFTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTHHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDV
HAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQV
LFVVTQADKTEPCHEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMT
RLQDELRTESVRSQAREQFTGAVDRIFDTAESVCIASVARTVLRAVRDTVVSVARAVWNWIFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08471.1 unknown Not tested SRL Protein 3e-134 99
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 9e-141 99
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 9e-141 99
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 3e-133 99
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 1e-132 98
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 6e-131 98
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 2e-131 98
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 2e-138 98
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 4e-131 98
unnamed AAL99256.1 unknown Not tested LEE Protein 2e-131 98
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 2e-139 98
Z1210 NP_286745.1 histone Not tested TAI Protein 1e-130 97
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 1e-130 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROD_49751 YP_003368340.1 GTP-binding protein VFG1062 Protein 2e-134 99
ROD_49751 YP_003368340.1 GTP-binding protein VFG1674 Protein 7e-133 98
ROD_49751 YP_003368340.1 GTP-binding protein VFG0654 Protein 2e-131 98