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Name : lysS (ROD_49431) Accession : YP_003368317.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 5204030 - 5205547 bp Length : 1518 bp Strand : + Note : - DNA sequence : ATGTCTGAACAACACGCACAGGGCGCTGACGCGGTAGCTGACCTTAACAATGAACTGAAAACGCGCCGCGAGAAACTGGC AGGCCTGCGCGAGCAGGGGATTGCCTTCCCGAACGATTTCCGTCGCGATCATACCTCAGACCAACTGCATGCTGACTTCG ACGGGAAAGAGAACGAAGAGCTGGAAGCGCTGAACGTTGAAGTCTCCGTTGCTGGCCGAATGATGACCCGCCGTATTATG GGCAAGGCCTCCTTTGTTACGTTGCAGGACGTTGGCGGCCGCATTCAGCTGTACGTTGCCCGCGACGATCTGCCGGAAGG CATTTACAACGAGCAGTTCAAGAAGTGGGACCTGGGCGATATCCTCGGCGCGAAGGGCAAGCTGTTCAAGACGAAAACCG GCGAGCTGTCTGTTCACTGCACCGAGCTGCGCCTGCTGACCAAAGCGCTGCGCCCGCTGCCGGACAAGTTCCACGGCCTG CAGGATCAGGAAGCGCGCTACCGTCAGCGCTATCTGGACCTCATCTCTAACGATGAATCGCGTAATACCTTTAAGATCCG CTCGCAGATTCTGGCGGGGATTCGCCAGTTCATGGTGGGTCGCGGCTTTATGGAAGTTGAAACCCCGATGATGCAGGTGA TTCCGGGCGGGGCGTCCGCGCGTCCGTTTATCACCCATCACAATGCGTTGGATCTCGACATGTACCTGCGTATTGCGCCG GAACTGTATCTGAAGCGTCTGGTGGTCGGCGGCTTCGAGCGCGTGTTTGAAATCAACCGTAACTTCCGTAACGAAGGGAT CTCCGTACGTCATAACCCTGAGTTCACCATGATGGAACTCTACATGGCGTATGCGGACTACAAAGATCTGATCGAACTGA CCGAGTCGCTGTTCCGTACGCTGGCGCAGGACGTTCTCGGCACCACTCAGGTTCCTTACGGCGATGAAGTCTTCGACTTC GGCAAACCGTTCGAAAAACTGACCATGCGCGAAGCGATCAAGAAGTACCGTCCGGAAACGGATATGGCCGAACTGGATAA CTTCGACTCCGCAAAAGCGATTGCTGAATCTATCGGCATTAAGGTTGAGAAGAGCTGGGGTCTGGGCCGTATCGTGACCG AGATCTTCGAAGAAGTGGCGGAAGCGCATCTGATTCAGCCGACCTTTATTACCGAGTATCCGGCTGAGGTATCACCGCTG GCGCGCCGTAACGATGTGAACCCGGAAATTACCGATCGCTTCGAGTTCTTCATCGGTGGTCGCGAAATCGGTAACGGCTT TAGCGAGCTGAACGATGCGGAAGATCAGGCCCAGCGTTTCCAGGATCAGGTTGATGCGAAAGCGGCGGGTGACGATGAAG CGATGTTCTTCGATGAAGACTACGTGACCGCGCTGGAGCATGGTCTGCCGCCGACGGCGGGTCTGGGGATTGGTATCGAC CGTATGGTGATGCTGTTCACCAACAGCCACACCATCCGCGATGTGATCCTGTTCCCGGCGATGCGTCCGGTTAAGTAA Protein sequence : MSEQHAQGADAVADLNNELKTRREKLAGLREQGIAFPNDFRRDHTSDQLHADFDGKENEELEALNVEVSVAGRMMTRRIM GKASFVTLQDVGGRIQLYVARDDLPEGIYNEQFKKWDLGDILGAKGKLFKTKTGELSVHCTELRLLTKALRPLPDKFHGL QDQEARYRQRYLDLISNDESRNTFKIRSQILAGIRQFMVGRGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAP ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDVLGTTQVPYGDEVFDF GKPFEKLTMREAIKKYRPETDMAELDNFDSAKAIAESIGIKVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPL ARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFQDQVDAKAAGDDEAMFFDEDYVTALEHGLPPTAGLGIGID RMVMLFTNSHTIRDVILFPAMRPVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-166 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003368317.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-166 | 69 |
