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Name : cfcH (ROD_46531) Accession : YP_003368059.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : type IV pilus biogenesis protein CfcH Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4907267 - 4908625 bp Length : 1359 bp Strand : + Note : - DNA sequence : ATGCATAAACGCCCCGTTATTGGCATAGCTGTGGTAACGGAAGATGATTATTTCCATGTACTGGAATTTATCTCGCTTAG AGCACTTAATGCCGCGCATACTGAAATTGATGTTACGGATACTCAGCAACGATTAGTGAATGTTCTGCAACGCGTAGTAA ATATGGGGGCAAGCGATCTCCATATTACGCGTAATGACGTACTTGCCGTCTTTGAAGCGCGCGTTAATGGCGTGTTGAAA CCATTTATGCAGATAAAGTCGCAGCAGTGCGATGAGATGGTCTTCGTCTTGTATAACGTGGAGGCAACCACCAGGGATAC GACCTGGAACCGTGCTATTCCGCAGAATGCGAATATTTTGTACAGCCTGAACGGTAAGCCTTACCGTTTCCGTTACGCCC ATTTTCCCATCTTTGGTGAAACGGCGGACTGTTACCATGCCGTACTGCGTATTATTCCTTCAGGCTTGCAGAAAGATAAT CTCGGCTCGCTGGAGAAAATAGGTATTTCTCAGGAGGAAACGGAGGATCTTAAACGCATCCTCAGTAATCCTTATGGCGC TTATGTGATCGCCGGGACGACGGGCTCGGGTAAATCCACCACCCTGAAAAATTTGATGGAGTGGCTGCAGATCAACCGTT ATGACGATCGCGGCTGCTTTCTGACGGTTGAAGACCCCGTGGAATACCAGATATATGGCGCAAAGCAAAGCTCGGTGGTG AGCGTGGACGGTGGTGGATTCCATGCGGCGATTAAATCCGCGCTGCGACGGGACCCTGATGTGCTGATGGTGGGGGAAAT TCGTGACAACGTGTCGGCCAATGCGCTGGCTGGCGCGGTGGAGAGCGGTCATTACTGTTTCACCACGGTACATGCGGGCA ATATCGTTTCGTTACTCCAGCGTATGTCCGCGCTGGGTATCAGCAGCGATAAGCTGTCGACGCCCGGTTTTATTGCAGGG CTGCAGTGTCAAAAGCTGGTGCCGGTGCTTTGTGATGCCTGTAAGCAGCTTTATGCGGAGAAAGTAATTGCCGGGCGCAC GTTTACCCTGTACCAGTCCAGCGAACAGGGCTGCGTAAAGTGCAGGCACAGCGGTATCAGAGGGCGCCAGTTGGCGATGG AGTATTTCTTACCGACCTACGATGAGCTGGCGGCGATTTCCCGTCAGGAGTGGCTGAATGTCTATACCCTGTGGCGTGAA AAGCGAAAAAGCGTTGCCGGCCTCGCTGAAGGTTTCGAAATTCGTGAAAAGGTGATGGCATATGTTCTCCAGGGACGCAT TGATGCCAGATGGTTTGCAATGGAATTCGGCGTTCTGCCGGTTGAAGATCTGGAGATGATCGTTGAAAAAATTCAGTAA Protein sequence : MHKRPVIGIAVVTEDDYFHVLEFISLRALNAAHTEIDVTDTQQRLVNVLQRVVNMGASDLHITRNDVLAVFEARVNGVLK PFMQIKSQQCDEMVFVLYNVEATTRDTTWNRAIPQNANILYSLNGKPYRFRYAHFPIFGETADCYHAVLRIIPSGLQKDN LGSLEKIGISQEETEDLKRILSNPYGAYVIAGTTGSGKSTTLKNLMEWLQINRYDDRGCFLTVEDPVEYQIYGAKQSSVV SVDGGGFHAAIKSALRRDPDVLMVGEIRDNVSANALAGAVESGHYCFTTVHAGNIVSLLQRMSALGISSDKLSTPGFIAG LQCQKLVPVLCDACKQLYAEKVIAGRTFTLYQSSEQGCVKCRHSGIRGRQLAMEYFLPTYDELAAISRQEWLNVYTLWRE KRKSVAGLAEGFEIREKVMAYVLQGRIDARWFAMEFGVLPVEDLEMIVEKIQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tcpT | YP_001216316.1 | toxin co-regulated pilus biosynthesis protein T | Virulence | VPI-1 | Protein | 2e-84 | 47 |
| VC0835 | NP_230483.1 | toxin co-regulated pilus biosynthesis protein T | Virulence | VPI-1 | Protein | 2e-84 | 47 |
| tcpT | AAK20762.1 | toxin-coregulated pilus biosynthesis protein T | Virulence | VPI | Protein | 1e-84 | 47 |
| tcpT | CAA45462.1 | - | Virulence | VPI | Protein | 1e-84 | 47 |
| tcpT | AAK20792.1 | toxin-coregulated pilus biosynthesis protein T | Virulence | VPI | Protein | 1e-84 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| cfcH | YP_003368059.1 | type IV pilus biogenesis protein CfcH | VFG0098 | Protein | 7e-85 | 47 |
