Gene Information

Name : cfcH (ROD_46531)
Accession : YP_003368059.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : type IV pilus biogenesis protein CfcH
Function : -
COG functional category : N : Cell motility
COG ID : COG2804
EC number : -
Position : 4907267 - 4908625 bp
Length : 1359 bp
Strand : +
Note : -

DNA sequence : 
ATGCATAAACGCCCCGTTATTGGCATAGCTGTGGTAACGGAAGATGATTATTTCCATGTACTGGAATTTATCTCGCTTAG
AGCACTTAATGCCGCGCATACTGAAATTGATGTTACGGATACTCAGCAACGATTAGTGAATGTTCTGCAACGCGTAGTAA
ATATGGGGGCAAGCGATCTCCATATTACGCGTAATGACGTACTTGCCGTCTTTGAAGCGCGCGTTAATGGCGTGTTGAAA
CCATTTATGCAGATAAAGTCGCAGCAGTGCGATGAGATGGTCTTCGTCTTGTATAACGTGGAGGCAACCACCAGGGATAC
GACCTGGAACCGTGCTATTCCGCAGAATGCGAATATTTTGTACAGCCTGAACGGTAAGCCTTACCGTTTCCGTTACGCCC
ATTTTCCCATCTTTGGTGAAACGGCGGACTGTTACCATGCCGTACTGCGTATTATTCCTTCAGGCTTGCAGAAAGATAAT
CTCGGCTCGCTGGAGAAAATAGGTATTTCTCAGGAGGAAACGGAGGATCTTAAACGCATCCTCAGTAATCCTTATGGCGC
TTATGTGATCGCCGGGACGACGGGCTCGGGTAAATCCACCACCCTGAAAAATTTGATGGAGTGGCTGCAGATCAACCGTT
ATGACGATCGCGGCTGCTTTCTGACGGTTGAAGACCCCGTGGAATACCAGATATATGGCGCAAAGCAAAGCTCGGTGGTG
AGCGTGGACGGTGGTGGATTCCATGCGGCGATTAAATCCGCGCTGCGACGGGACCCTGATGTGCTGATGGTGGGGGAAAT
TCGTGACAACGTGTCGGCCAATGCGCTGGCTGGCGCGGTGGAGAGCGGTCATTACTGTTTCACCACGGTACATGCGGGCA
ATATCGTTTCGTTACTCCAGCGTATGTCCGCGCTGGGTATCAGCAGCGATAAGCTGTCGACGCCCGGTTTTATTGCAGGG
CTGCAGTGTCAAAAGCTGGTGCCGGTGCTTTGTGATGCCTGTAAGCAGCTTTATGCGGAGAAAGTAATTGCCGGGCGCAC
GTTTACCCTGTACCAGTCCAGCGAACAGGGCTGCGTAAAGTGCAGGCACAGCGGTATCAGAGGGCGCCAGTTGGCGATGG
AGTATTTCTTACCGACCTACGATGAGCTGGCGGCGATTTCCCGTCAGGAGTGGCTGAATGTCTATACCCTGTGGCGTGAA
AAGCGAAAAAGCGTTGCCGGCCTCGCTGAAGGTTTCGAAATTCGTGAAAAGGTGATGGCATATGTTCTCCAGGGACGCAT
TGATGCCAGATGGTTTGCAATGGAATTCGGCGTTCTGCCGGTTGAAGATCTGGAGATGATCGTTGAAAAAATTCAGTAA

Protein sequence : 
MHKRPVIGIAVVTEDDYFHVLEFISLRALNAAHTEIDVTDTQQRLVNVLQRVVNMGASDLHITRNDVLAVFEARVNGVLK
PFMQIKSQQCDEMVFVLYNVEATTRDTTWNRAIPQNANILYSLNGKPYRFRYAHFPIFGETADCYHAVLRIIPSGLQKDN
LGSLEKIGISQEETEDLKRILSNPYGAYVIAGTTGSGKSTTLKNLMEWLQINRYDDRGCFLTVEDPVEYQIYGAKQSSVV
SVDGGGFHAAIKSALRRDPDVLMVGEIRDNVSANALAGAVESGHYCFTTVHAGNIVSLLQRMSALGISSDKLSTPGFIAG
LQCQKLVPVLCDACKQLYAEKVIAGRTFTLYQSSEQGCVKCRHSGIRGRQLAMEYFLPTYDELAAISRQEWLNVYTLWRE
KRKSVAGLAEGFEIREKVMAYVLQGRIDARWFAMEFGVLPVEDLEMIVEKIQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0835 NP_230483.1 toxin co-regulated pilus biosynthesis protein T Virulence VPI-1 Protein 2e-84 47
tcpT AAK20762.1 toxin-coregulated pilus biosynthesis protein T Virulence VPI Protein 1e-84 47
tcpT CAA45462.1 - Virulence VPI Protein 1e-84 47
tcpT AAK20792.1 toxin-coregulated pilus biosynthesis protein T Virulence VPI Protein 1e-84 47
tcpT YP_001216316.1 toxin co-regulated pilus biosynthesis protein T Virulence VPI-1 Protein 2e-84 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cfcH YP_003368059.1 type IV pilus biogenesis protein CfcH VFG0098 Protein 7e-85 47