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Name : gabD (ROD_45761) Accession : YP_003367984.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase [NADP+] Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 4826572 - 4828044 bp Length : 1473 bp Strand : + Note : - DNA sequence : ATGACATCGAAAGGAGAAAACACCATGCAAACGCTCCAGGAGAACGAACTGTTTCAGACGGGATATCTGGTTGATGGGCT GTGGAAAACGCTGGATACCACTTTTGATGTCCTTAACCCGGCGACCGGTGAAACGATCGCGAAGGTGGCAAAAGCGGGCA AACAGCAGACCGAAGAGGCGATAGCCGCCGCCAGCAAGGCCTTTCCCGGCTGGCGGGCGAAAACGGCGAAAGAGCGCTCG GCGATTCTGTATCGCTGGTATGAACTGATTATTGAAAATAAAGCCTGGCTGGCGCGTCTGATGACCACAGAGCAGGGCAA GCCGTTAAAAGAGGCGGAGGGTGAAGTTGAGTACGCCGCCAGCTTTATCCAGTGGTTTGCGGAACAGGCGAAACGCGCCA ATGGCGAAATCATCCCGCCGATCAAGCCGGGGTCACGTATTCTGGCCACGCGCGAACCGGTTGGCGTAGTAGCGGCCATC ACGCCGTGGAATTTCCCGATGGCGATGCTGACGCGAAAACTCGGCCCGGCGCTGGCGGCTGGCTGTACCGGCGTTATTAA ACCCGCCAATAACACGCCTCTCAGCGCTTTTGCGCTGCTTACCCTGGCGAAGAAAGCGGGCGTGCCGGATGGCGTCTTAA ACGCCGTGGCGGGAAATACGCAGGAGATCAGCGACGCGATTATGGCCAGCCATGAAGTGCGTAAAATTTCCTTTACCGGT TCGACGGCGGTAGGGAAAACGCTGGTGCGTAACGCGGCGGAAACCATGAAGAAGGTGTCAATGGAGCTTGGCGGCAATGC GCCATACATCGTCTTTGACGATGCCGATATCGATGCCGCCGTACAGGGGGCGATCGCCAATAAATTCCGTAACGCCGGGC AGGTGTGCGTCAGCGTCAATCGCTTTTATATTCAGGAAACGGTATACGACGAATTCACCCGCAAGCTGGCCGACGCCGTG CAGGCGCTGAAGGTGGGCAACGGTCTGGAGGATGGCGTGGTGGTCGGTCCGCTTATCGAGCCGTCTGCGGTCGATAAAGT GCGTGAACACGTTGAGGATGCGGTAGCGAAAGGGGCGAAAGTGCTGGCTGGCGGCCAGGCGCATGCGTCAGGCGGCAACT TCTGGCAGCCGACGGTGCTGGGCGAGTGCAGCGACGGGATGAAACTGGCGAGCGAAGAAACCTTCGGCCCGGTTGCCGCC TGCTTCCGCTTTACCAGCGAAGAGGAGGTGATCCAGCGGGCGAACAACACGCCGTTTGGCCTCGCCGCCTACTTTTATTC GCAAAACCTGCAGCGGGTGTTCCGCGTCTCTCAGGCGATTGAAAGCGGCATGATCGGCATTAACGAGTGCGCGGTGTCCA CTGAACTGGGGCCGTTTGGCGGCGTGAAGGAGTCAGGGCTGGGACGTGAAGGATCGGTGCTGGGGCTGGACGAATTTCTG GAAGTGAAAACCCTGCATATTGGCGGCCTGTAG Protein sequence : MTSKGENTMQTLQENELFQTGYLVDGLWKTLDTTFDVLNPATGETIAKVAKAGKQQTEEAIAAASKAFPGWRAKTAKERS AILYRWYELIIENKAWLARLMTTEQGKPLKEAEGEVEYAASFIQWFAEQAKRANGEIIPPIKPGSRILATREPVGVVAAI TPWNFPMAMLTRKLGPALAAGCTGVIKPANNTPLSAFALLTLAKKAGVPDGVLNAVAGNTQEISDAIMASHEVRKISFTG STAVGKTLVRNAAETMKKVSMELGGNAPYIVFDDADIDAAVQGAIANKFRNAGQVCVSVNRFYIQETVYDEFTRKLADAV QALKVGNGLEDGVVVGPLIEPSAVDKVREHVEDAVAKGAKVLAGGQAHASGGNFWQPTVLGECSDGMKLASEETFGPVAA CFRFTSEEEVIQRANNTPFGLAAYFYSQNLQRVFRVSQAIESGMIGINECAVSTELGPFGGVKESGLGREGSVLGLDEFL EVKTLHIGGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 6e-120 | 57 |
