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Name : gspD (ROD_44971) Accession : YP_003367904.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : T2SS protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 4752127 - 4754115 bp Length : 1989 bp Strand : - Note : - DNA sequence : ATGCTTACCCGTTTTCGCCTGACAGGCATTTCGCTGGCACTTCTGCTGGTGACATCCGGTACGCCAGCGCTGTCGGCGAA TTATACGGCAAACTTTAATAACGCCGATATTAAGACCTTTGTCGATATCGTCGGCCAGAATATGGGCAAAACGATTCTGC TGGCGCCGGACGTCAGCGCGTCCATTTCGGTCAGAAGCGCGGATGTTTTTACCGAAGAAGAGTACTACCAGTTTTTTCTC AGCGTACTTGATTTATACGGTTTCTCCATCGTCACGCTGGATAACGGCATCCTTAAGGTTGTACGTTCAGACAGGGTAAA GACGGCACCAGGCCGACTCTCCAGCGACGCACATCCCGGTAAAGGCGATGAATTAGTGACCCGGGTAGTCCCGCTGGACA ATGTGCCCGCCCGCGCGCTGGCGCCGTTGCTGCGTCAAATGCTGGACGCCACTGGCGCCGGCAATGTGGTGCACTATGAA CCGTCAAACGTCCTGATCATTACCGGCAAGGCTTCTGCGGTCAATCGCGTGCTGGAAGTGGTGAAACGCGTGGACGTTAT AGGCACGGAAAAGGAGCAGATTATTCCGCTCAGATATGCCTCCGCCGTCGACCTTGCCGAAGTGCTTAACGATCTGGCGC GTGAAAGCGGTAAGGAAGCGCGCCCGGCGACCCTGCAAACCCGTATCGTCGCCGACGAGCGCAGCAATTCGCTGATTGTC AGCGGCTCCGATCGCGCCCGCGCCAGAGTCGTCCGGCTGGCGACACACCTTGATACCCAGGAACAGGGGCAGGGAAACAC CCGCGTCTGGTATCTCAAATATGCCAAAGCGGATAAGCTGGTCGAGGTGTTGACCGGCGTTTCCCAGCAGATGGAGAGCG AAAATGGCAAAGCGCCAAAAACGAGCGCCCCCAGCAGCAATAACGCCATTTCCATTACCGCAGACGAACAGACCAACTCG CTGGTCATTACCGCGAATCAAAGTCAGCTTCAGCAACTGGAGCCGGTTATTGAGAAGCTGGATATTCGCCGTGCGCAGGT GCTGGTCGAAGCCATTATCGTTGAGGTCCAGGACGGTAAGGGGCTGAATCTTGGCGTGCAGTGGGCCAATAAAAATATCG GCGCCACCCAGTTTACTAATACAGGCTTACCTATTTTCAATGCTGCGCAGGGGGTGAAAGAGTTTAAAAAACAGGGCGGC ATCACCAGCGATAACCCGGCATACGATCTCTTTAGTAAGTACCGTGGCATGGCGGCTGGCTTTTTCAGCGGCGACTGGGC GGTGCTGCTGACAGCGTTAAGCTCCGACAGTAAAAACGATATTTTATCCACCCCCAGCATCGTCACGCTGGATAACAAAG AAGCCTCCTTCAACGTCGGCCAGGATGTTCCCGTGCTCTCCGGTTCGCAAACCACCTCCGGAGATAATATCTACAGTACT GTCGAACGCAAAACCGTCGGCACCAAGCTCAAAGTCACGCCGCAAATAAACGAAGGCGACTCGGTGCTCATGGAGATTGA GCAGGAGGTTTCCAGCGTCGATTCTACCGCCTCTTCTTCATCGCTTGGACCCACGTTCAACACCCGCACCATTCAGAACG CCGTGCTGGTCAAAAGCGGCGAAACGGTGGTGCTGGGCGGCCTGATGGATGACTCAAGTAAAGAAGAAGTCTCCAAAGTG CCGTTACTGGGGGACATTCCGTTTATCGGTCAGCTCTTTCGCTATACCAATCATGAAAAAAGCAAACGTAACCTGATGGT ATTTATTCGTCCGACTATCATCAGAGACGATGATGTCTATCGCTCGTTATCACGCGAAAAATACACCCACTTTCGCGACA TACAAAAAACGCGCGCGGATAAAAACAGCAGTCAGTTGATCAACGTCGAGGCCATTGATGCGTTGGATGATGCGGCATTT GAGCATACACCCGCAGCGAAAAGCGCATCCAAACCGGCCAACCCGTTCAGTAACGGCGCGGCAAAATGA Protein sequence : MLTRFRLTGISLALLLVTSGTPALSANYTANFNNADIKTFVDIVGQNMGKTILLAPDVSASISVRSADVFTEEEYYQFFL SVLDLYGFSIVTLDNGILKVVRSDRVKTAPGRLSSDAHPGKGDELVTRVVPLDNVPARALAPLLRQMLDATGAGNVVHYE PSNVLIITGKASAVNRVLEVVKRVDVIGTEKEQIIPLRYASAVDLAEVLNDLARESGKEARPATLQTRIVADERSNSLIV SGSDRARARVVRLATHLDTQEQGQGNTRVWYLKYAKADKLVEVLTGVSQQMESENGKAPKTSAPSSNNAISITADEQTNS LVITANQSQLQQLEPVIEKLDIRRAQVLVEAIIVEVQDGKGLNLGVQWANKNIGATQFTNTGLPIFNAAQGVKEFKKQGG ITSDNPAYDLFSKYRGMAAGFFSGDWAVLLTALSSDSKNDILSTPSIVTLDNKEASFNVGQDVPVLSGSQTTSGDNIYST VERKTVGTKLKVTPQINEGDSVLMEIEQEVSSVDSTASSSSLGPTFNTRTIQNAVLVKSGETVVLGGLMDDSSKEEVSKV PLLGDIPFIGQLFRYTNHEKSKRNLMVFIRPTIIRDDDVYRSLSREKYTHFRDIQKTRADKNSSQLINVEAIDALDDAAF EHTPAAKSASKPANPFSNGAAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-126 | 48 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 7e-133 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_003367904.1 | T2SS protein D | VFG2047 | Protein | 7e-124 | 48 |
