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Name : gspE (ROD_44961) Accession : YP_003367903.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : T2SS protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4750661 - 4752130 bp Length : 1470 bp Strand : - Note : - DNA sequence : ATGAAACAGCTCAACTGGCGAAAAGCGCAACAGCACGGCGTGGTCGTACACCACGACGAGGTGATTTACGCCGATACCGT TCCTTTGGATCGTCTGCTCGACGTTGCAGCGGCCCGGAGCCTGCGTTTCACCCGACTTAACGCGCAGCAGTTCGAAGAAC GTCTGGAGATCCTGTTCCAGCAGGACAGCGGGACCGCGCAGCTGATCGCGGAGGACATCAGCAATTCTGACGATCTCAGC GCCCTTTCGGAAGAGATCCCCATGAATGAAGATCTGCTTAACGAGCAGTCCGACGCTCCGGTGATTCGCCTGATTAACGC CGTGCTCAGCGAAGCGATAAAAGAACATGCCTCGGATATTCATATTGAGATATTCGAAAAAAAGATGAGCATCCGCTTTC GCGTGGACGGTGTGCTGCGTCAGGTGGTACAGCCGGATAAAAAACTGGCATCGCTCTTAATCTCACGCATTAAGGTCATG GCGAAGCTGGATATTGCGGAAAAGCGTCTGCCGCAGGATGGACGCATCACCCTGAAAATTGGCCATCGCAATATTGACGT TCGCGTCTCGACCCTGCCCTCTCAGCACGGTGAACGCGTGGTGCTGCGCCTGCTGGATAAAAGCAGCCTGCGCCTCTCCG TCGACAAGCTGGATATGTCGGCTCAGGATGCTGAAGATCTTAAACGCCTCATCGCTCTGCCCCACGGTATTATTCTGGTC ACCGGACCAACCGGCTCGGGTAAAAGCACCACCCTTTACGCCATCTTATCTGCCCTGAACAGTCCGGAACGCAATATCCT CACCGTGGAGGATCCCATTGAATATGAGCTGGAAGGAATAGGACAGACCCAGGTGAATAGCCGGGTGGATATGTCCTTTG CTCGCGGCCTGCGCGCGATTCTGCGCCAGGACCCCGACGTCGTAATGGTAGGCGAGATCCGTGACGCCGAAACCGCGCGC ATCGCGGTACAGGCATCGCTGACAGGCCATCTGGTGCTGTCAACGCTGCATACCAATAGCGCCAGCGGCGCCGTGACGCG CCTGCGTGATATGGGAACCGAATCTTTTCTGCTCTCGTCCTCTCTGGTTGGCGTTATCGCTCAGCGCCTGGTCAGACGCC TTTGCCAGCACTGCAAATCCGTACATCCCCTAACGCCACAGCAGGCGCAGTTACTACGGTCGCACGGCTTTACCTCCGCA CAGCTATGGCAGGCGAAGGGCTGTCCGGTATGCAGACAGAGCGGCTATCAGGGACGACTGGCGCTGCACGAACTGCTGAT CGTCACGCCGGAAATACGCGCGGCTATTCACAGCGAGGTAAACGAGCAGCAGCTTGAGGCGCTACAGACCCGCCAGCACC GGAATCTGCTCGCCAACGGACTGCGCGTGGCGGTGGAAGGGCTGACGTCACTGGACGAAGTGCTGCGCGTCACCGCTGAA GGCGACGGATCGCAGGAGGTGGCGCCATGA Protein sequence : MKQLNWRKAQQHGVVVHHDEVIYADTVPLDRLLDVAAARSLRFTRLNAQQFEERLEILFQQDSGTAQLIAEDISNSDDLS ALSEEIPMNEDLLNEQSDAPVIRLINAVLSEAIKEHASDIHIEIFEKKMSIRFRVDGVLRQVVQPDKKLASLLISRIKVM AKLDIAEKRLPQDGRITLKIGHRNIDVRVSTLPSQHGERVVLRLLDKSSLRLSVDKLDMSAQDAEDLKRLIALPHGIILV TGPTGSGKSTTLYAILSALNSPERNILTVEDPIEYELEGIGQTQVNSRVDMSFARGLRAILRQDPDVVMVGEIRDAETAR IAVQASLTGHLVLSTLHTNSASGAVTRLRDMGTESFLLSSSLVGVIAQRLVRRLCQHCKSVHPLTPQQAQLLRSHGFTSA QLWQAKGCPVCRQSGYQGRLALHELLIVTPEIRAAIHSEVNEQQLEALQTRQHRNLLANGLRVAVEGLTSLDEVLRVTAE GDGSQEVAP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 9e-117 | 58 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-117 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_003367903.1 | T2SS protein E | VFG0182 | Protein | 6e-117 | 59 |
| gspE | YP_003367903.1 | T2SS protein E | VFG2048 | Protein | 2e-118 | 58 |
| gspE | YP_003367903.1 | T2SS protein E | VFG1876 | Protein | 6e-113 | 56 |
| gspE | YP_003367903.1 | T2SS protein E | VFG0112 | Protein | 8e-75 | 46 |
| gspE | YP_003367903.1 | T2SS protein E | VFG2426 | Protein | 3e-67 | 45 |
| gspE | YP_003367903.1 | T2SS protein E | VFG1880 | Protein | 8e-72 | 43 |
