Gene Information

Name : dnaB (ROD_36391)
Accession : YP_003367084.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Unknown
Product : replicative DNA helicase protein DnaB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 3832037 - 3833452 bp
Length : 1416 bp
Strand : -
Note : -

DNA sequence :
ATGGCAGGAAATAAACCCTTCAACAAACAACAGACTGATGCCCGTGAGCGCGACCCGCAGGTTGCCGGGCTGAAAGTGCC
GCCGCACTCGATTGAAGCGGAACAGTCGGTGTTGGGCGGTTTAATGCTGGATAACGAGCGCTGGGACGACGTTGCCGAAC
GCGTGGTGGCGGATGATTTTTATACCCGTCCGCATCGTCATATCTTTACCGAGATGGGGCGGTTGCAGGAGAGCGGCAGT
CCGATCGATCTGATTACGCTTGCAGAATCCCTTGAGCGTCAGGGGCAACTGGACAGCGTCGGCGGCTTTGCGTATCTGGC
TGAACTGTCAAAGAATACGCCAAGCGCGGCGAACATCAGCGCCTACGCCGATATCGTGCGCGAGCGCGCCGTTGTGCGCG
AAATGATCTCCGTGGCTAATGAGATAGCCGAAGCGGGTTTCGATCCGCAGGGGCGCACCAGCGAAGACCTGCTCGATCTC
GCCGAATCCCGCGTCTTTAAAATTGCCGAAAGCCGGGCCAATAAAGACGAAGGGCCAAAAAATATCGCCGATGTGCTCGA
CGCCACCGTCGCGCGTATCGAACAGCTGTTCCAGCAGCCGCACGACGGCGTAACCGGCGTCAATACCGGCTACGACGATC
TGAATAAAAAGACCGCCGGTTTGCAGCCCTCGGATTTGATTATCGTCGCCGCGCGTCCGTCAATGGGGAAAACCACTTTT
GCGATGAACCTCGTCGAAAACGCGGCGATGTTGCAGGATAAACCGGTACTTATCTTCAGTCTGGAGATGCCCTCGGAACA
GATTATGATGCGTTCTCTGGCCTCGCTGTCGCGCGTCGATCAGACCCGCATCCGTACCGGCCAGCTTGACGATGAGGACT
GGGCGCGCATATCCGGCACGATGGGCATTCTGCTGGAAAAACGTAACATCTACATTGACGACTCTTCCGGCCTGACGCCG
ACGGAGGTGCGTTCCCGCGCGCGCCGTATCGCCCGCGAGCACGGCGGCATCGGGCTTATCATGATCGACTACCTCCAGCT
GATGCGCGTGCCGTCGCTTTCTGATAACCGTACGCTGGAAATCGCCGAAATCTCCCGCTCGCTGAAGGCGCTGGCGAAAG
AGCTACAAGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCGCTGGAACAGCGCGCCGATAAGCGCCCGGTCAACTCA
GACCTGCGTGAATCCGGCTCCATCGAGCAGGATGCCGACCTGATCATGTTTATCTACCGTGATGAGGTCTATCACGAGAA
CAGCGACCTGAAAGGCATCGCGGAAATCATTATTGGTAAGCAGCGTAACGGCCCTATCGGTACGGTACGACTGACATTTA
ACGGGCAATGGTCGCGTTTTGATAATTATGCCGGGCCACAATACGACGACGAATAA

Protein sequence :
MAGNKPFNKQQTDARERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMGRLQESGS
PIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDL
AESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTF
AMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTP
TEVRSRARRIAREHGGIGLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNS
DLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 1e-105 55
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 7e-107 54
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 2e-106 54
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 2e-106 54
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 2e-100 50
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 2e-91 50
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 2e-91 50
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 2e-87 49
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 1e-82 45