Gene Information

Name : qseB (ROD_35671)
Accession : YP_003367018.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : two-component system response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3758228 - 3758887 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
ATGCGAATTTTACTGATTGAAGATGATGCGTTGATTGGCGATGGCATTAAAACAGGTCTGAGTAAAATGGGCTTTTGCGT
CGACTGGTTCACCGACGGTCGTCAGGGGAAGGAAGCGCTGCATAGCGCGCCGTATGACGCGGTGATCCTCGACCTGTCGC
TGCCGGGAATGGACGGGCGCGACATTCTGCGCGACTGGCGCGAACAGGGTAAACGTGAGCCGGTATTGATACTGACCGCG
CGCGATGCGCTGGCGCAGCGGGTCGAAGGCTTGCGCCTCGGCGCGGACGATTATCTCTGTAAGCCCTTCGCGCTTATTGA
GGTTGCCGCCAGGCTGGAGGCGTTAATGCGCCGCGCCAGCGGCCAGGCCAGCAGCGAACTATGCCACGGACAGGTAACGC
TCAATCCCGGTAACCGGGTCGCCGCGCTGAACGGCAGCGCCTTAGCGCTTAAGCCAAAAGAGTTCGCGCTACTTGAACTG
TTAATGCGTAATAAAGGGCGAGTGCTGCCGCGTAAACTTATTGAAGAAAAGCTCTATAACTGGGACGAAGAGGTGACCAG
CAACGCCGTTGAGGTTCACGTCCACCATCTGCGCCGTAAGCTGGGCAGCGATTTTATTCGTACCGTTCACGGCATCGGCT
ATACCCTTAGCGAGGCATAA

Protein sequence : 
MRILLIEDDALIGDGIKTGLSKMGFCVDWFTDGRQGKEALHSAPYDAVILDLSLPGMDGRDILRDWREQGKREPVLILTA
RDALAQRVEGLRLGADDYLCKPFALIEVAARLEALMRRASGQASSELCHGQVTLNPGNRVAALNGSALALKPKEFALLEL
LMRNKGRVLPRKLIEEKLYNWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLSEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-39 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_003367018.1 two-component system response regulator BAC0487 Protein 9e-39 43
qseB YP_003367018.1 two-component system response regulator BAC0638 Protein 2e-30 43
qseB YP_003367018.1 two-component system response regulator BAC0308 Protein 2e-36 43
qseB YP_003367018.1 two-component system response regulator BAC0347 Protein 3e-34 42
qseB YP_003367018.1 two-component system response regulator NC_002516.2.879194.p Protein 2e-30 41
qseB YP_003367018.1 two-component system response regulator BAC0083 Protein 1e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_003367018.1 two-component system response regulator VFG0473 Protein 2e-40 46
qseB YP_003367018.1 two-component system response regulator VFG1390 Protein 7e-32 41