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Name : ROD_34981 (ROD_34981) Accession : YP_003366956.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3693626 - 3696100 bp Length : 2475 bp Strand : + Note : - DNA sequence : ATGTCGGTAAAACTAAAAACAAAGATGACGATAATAGCCCTTCAGGTATTCAGCTGCTGTTATGTTTCAGCGGTCTGGTC CGAGGCAAGCGTTGAATTTAATACCGATGTCCTGGATGCTGCGGATCGCACCCGCATCGATCTGTCGCGCTTTGCGACGG ACAACTATGTTACCCCTGGCGATTATCTGCTGGATATCCGTATTAACGGGCAGCAGATTGGTCAGGAGAAAATTCGTTAC ATCGAGGCCCCCGACGGCAAACGCACGCTGCCGTGCATCAGCAGCGACCTGCTGGCTAAACTGGCGCTGAAGGAAGACGC GCGGCTGCAGGTCACTCCGCTGTATGAGAACTGCTATTCGCTGCAAAGCCTGCCGGGAGCAAAGCTGACCAACTACGCCG GCGTGCTGGAAATCACCGTACCGCAGGCGTGGATGAAATATAACGACCCCGACTGGACGCCGCCGGAGCGCTGGGACGAA GGGGTGGCCGGGCTGATTTTTGACTACAGCCTCAACGGGCAGCTCACCCGTCAGTTCAACAATCATGAGAACTACAGCTC GCTGTCGGGCTACGGCCAGGCGGGCGCTAATATCGGCGGCTGGCGTCTGCGCGGCGAGTACCAGACCAGCTACTACAGCC AGAACCACCAGTTCGATTTCGACTGGAATCAGATCTACGCCTATCGCCCGCTGCCGATGATGGCGGCGAAGCTGACGCTC GGTGAGATTTACCTTAACTCGCAGGTGTTCGACACGCTGCGCTTCACCGGGATCAACCTCGCCAGCGATGAGCGGATGCT GCCGCCTGCGTTGCAGGGCTATGCGCCGGAAATTCACGGCATCGCCCGCAGCAACGCCAAAGTCACCGTCAGCCAGAGCG GGCGCGTTATTTATGAAACCACCGTGCCCGCCGGACCGTTCAATATTCAGGATTTACGCAGTTCGGTGCGCGGTACGCTC GACGTGCGCGTGGAGGAGCAGGACGGATCGGTGTCCACTTTCCAGGTGAATACCACCAATATCCCGTATCTGACGCGTCC GGGCTATGTGCGCTACAACATTTCCGGCGGTACGCCGTCTCGTTATAACCACAAAATGCAGGGGCCAACCTTCCTCTCCG GCGATTTCTCCTGGGGGGTCAGCAACGCGTGGTCGCTGTACGGCGGCCTGCAGTCCTCCGGTGAAGAGTACACCGCGGCC TCGCTGGGTATCGGGCGCGACCTCTATCTGCTGGGAGCGATATCGGTGGACGCCACCGAGTCGTGGAGCCGCACGCCGGA AGGCGAGCGCAAGAAGGGCACCTCTTACAAGCTGAGCTATGCGAAAACCTTTGATGAGTACCACAGCGCCATCACCTTCG CGGGCTACCGTTTCTCGCAGGAAGATTTTCGTTCAATGGCGCAATACCTCGACGAGCGCTACGAGGACTATGACCACCTC GGACGTGAAAAAGAGTTGTATACCATCACCGGCAATAAAACCTTCTGGGCTGATGAAGCGGATAAAGCGACCACGCTCTT TCTGACCTGGACGCATCAGAACTACTGGGACAGGCGCAGCCAGGATCGCTACGGCATGTCGGTCGGGCGCTCTTTCCGCA TCGGCAATATCCGCGGCGTGACCGCTAACCTCTCCGCCTGGCGTACAGATTATAAAGGGCGTAAGGACGACTCCATCTCC TTCTCCCTGTCAGTGCCGGTTGGCGACAACAAATGGGCGGGGCTGGATGTACAGACCAATAACGGCAAAACCAGCCCGAT GGCCTCTTACACCGATAACAGCGATTACAACAACCTGTGGCGGATCCGCGCCGGCGCCAGCCTGAACGGCAACGCCAGCG TGGACGGTTATTACCAGCATCGTTCGCAGCTGGCGGAAATTAATACCAACGCCAGCTATCAGCAGAACGAGTATATGGCG CTGAGCGCCACCCTGCGCGGCGGCTTCACGGCGACCCGATACGGCGCGGCGATGCACAACAGCGGCGCGACGCTTAACAC GGCGCGCGTGATGGTCGACACCAACGGAATTGGCGGCGTGCCGCTCAACGGCGAGAAGTCGCGGACCAACCGCTTCGGCA TCGCCGTGGTGCCGGATGTGGTGAGCTACAACAGCTTTGACACCCGCGTGGACGTGGACGCGATGGACGGCGATATCGAA CCGTCAAAAGCCATCAGCACCACCACGCTTACCGAAGGCGCTATTGGCTATCAGACCTTCGGCATGGCGAAAGGGATGAA GATGATGGGCACGCTGCGCCTCGCGGATAACAGCGTCCCGCCGTTCGGCGCGGAAGTTTACAACGCCGACGGTATCAGCG TCGCGATGGTGCTGGAGGACGGCCAGGCCTGGCTTGCCGGGGTGAATGCCGATGAAACGCTGAAGGTGATGTGGGGCGGA AAACAGCAGTGCCAGATCACCATTCCGCCAGGCGCGACGGACGGCGGCGAGAACATGCTGCTGCCGTGTCGTTAA Protein sequence : MSVKLKTKMTIIALQVFSCCYVSAVWSEASVEFNTDVLDAADRTRIDLSRFATDNYVTPGDYLLDIRINGQQIGQEKIRY IEAPDGKRTLPCISSDLLAKLALKEDARLQVTPLYENCYSLQSLPGAKLTNYAGVLEITVPQAWMKYNDPDWTPPERWDE GVAGLIFDYSLNGQLTRQFNNHENYSSLSGYGQAGANIGGWRLRGEYQTSYYSQNHQFDFDWNQIYAYRPLPMMAAKLTL GEIYLNSQVFDTLRFTGINLASDERMLPPALQGYAPEIHGIARSNAKVTVSQSGRVIYETTVPAGPFNIQDLRSSVRGTL DVRVEEQDGSVSTFQVNTTNIPYLTRPGYVRYNISGGTPSRYNHKMQGPTFLSGDFSWGVSNAWSLYGGLQSSGEEYTAA SLGIGRDLYLLGAISVDATESWSRTPEGERKKGTSYKLSYAKTFDEYHSAITFAGYRFSQEDFRSMAQYLDERYEDYDHL GREKELYTITGNKTFWADEADKATTLFLTWTHQNYWDRRSQDRYGMSVGRSFRIGNIRGVTANLSAWRTDYKGRKDDSIS FSLSVPVGDNKWAGLDVQTNNGKTSPMASYTDNSDYNNLWRIRAGASLNGNASVDGYYQHRSQLAEINTNASYQQNEYMA LSATLRGGFTATRYGAAMHNSGATLNTARVMVDTNGIGGVPLNGEKSRTNRFGIAVVPDVVSYNSFDTRVDVDAMDGDIE PSKAISTTTLTEGAIGYQTFGMAKGMKMMGTLRLADNSVPPFGAEVYNADGISVAMVLEDGQAWLAGVNADETLKVMWGG KQQCQITIPPGATDGGENMLLPCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-152 | 44 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 3e-152 | 44 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 5e-156 | 44 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-152 | 43 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 1e-152 | 43 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-151 | 43 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 1e-151 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ROD_34981 | YP_003366956.1 | fimbrial usher protein | VFG1548 | Protein | 1e-152 | 44 |
| ROD_34981 | YP_003366956.1 | fimbrial usher protein | VFG0884 | Protein | 2e-152 | 44 |
| ROD_34981 | YP_003366956.1 | fimbrial usher protein | VFG0895 | Protein | 8e-153 | 43 |
