Gene Information

Name : soxS (ROD_34471)
Accession : YP_003366907.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Resistance
Product : AraC family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 3636087 - 3636410 bp
Length : 324 bp
Strand : -
Note : -

DNA sequence : 
ATGTCCCATCAGCAAATTATTCAGACTCTTATTGAATGGATTGATGAACATATCGACCAACCGCTGAACATTGATGTGGT
CGCAAAAAAATCAGGTTATTCAAAATGGTATTTACAGCGGATGTTTCGGACGGTGATGCACCAGACGCTGGGCGACTACA
TCCGTCAGCGTCGGCTGCTGTTAGCCGCCGTGGAGTTACGCAATACCGAACGCCCCATCTTCGATATTGCGATGGATTTA
GGCTATGTGTCGCAGCAGACCTTTTCCCGCGTCTTTCGCCGGGAGTTTGATCGCACCCCCAGCGACTATCGTCACCGCCT
GTAA

Protein sequence : 
MSHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVMHQTLGDYIRQRRLLLAAVELRNTERPIFDIAMDL
GYVSQQTFSRVFRREFDRTPSDYRHRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 7e-46 98
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 1e-20 49
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 1e-20 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_003366907.1 AraC family transcriptional regulator CP001138.1.gene4488. Protein 2e-46 98
soxS YP_003366907.1 AraC family transcriptional regulator BAC0371 Protein 3e-45 95
soxS YP_003366907.1 AraC family transcriptional regulator NC_002695.1.914293.p Protein 3e-45 95
soxS YP_003366907.1 AraC family transcriptional regulator CP001918.1.gene327.p Protein 1e-45 95
soxS YP_003366907.1 AraC family transcriptional regulator CP000034.1.gene4505. Protein 5e-45 94
soxS YP_003366907.1 AraC family transcriptional regulator CP000647.1.gene4499. Protein 8e-45 92
soxS YP_003366907.1 AraC family transcriptional regulator CP001138.1.gene612.p Protein 3e-25 49
soxS YP_003366907.1 AraC family transcriptional regulator NC_010558.1.6276025. Protein 5e-21 49
soxS YP_003366907.1 AraC family transcriptional regulator CP000647.1.gene1624. Protein 1e-19 42
soxS YP_003366907.1 AraC family transcriptional regulator CP001918.1.gene2033. Protein 7e-20 42
soxS YP_003366907.1 AraC family transcriptional regulator BAC0560 Protein 9e-20 41
soxS YP_003366907.1 AraC family transcriptional regulator NC_002695.1.917339.p Protein 9e-20 41
soxS YP_003366907.1 AraC family transcriptional regulator CP001138.1.gene1637. Protein 1e-19 41
soxS YP_003366907.1 AraC family transcriptional regulator CP000034.1.gene1596. Protein 8e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_003366907.1 AraC family transcriptional regulator VFG0585 Protein 2e-46 98
soxS YP_003366907.1 AraC family transcriptional regulator VFG1038 Protein 5e-21 49