|
Name : srlQ (ROD_31061) Accession : YP_003366610.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : D-arabinose 5-phosphate isomerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : - Position : 3275029 - 3275994 bp Length : 966 bp Strand : - Note : - DNA sequence : ATGAGTGATGCACTACTGAACGCAGGCCGTCAGACGTTATTGCTGGAGCTACAGGAAGCAAGCCGTCTGCCGGAACGTCT GGGCGATGATTTTGTCCGCGCCGCCAATACCATTATCCACTGCGAAGGCAAAGTGGTGGTTTCGGGTATCGGCAAATCGG GGCATATCGGCAAAAAAATCGCCGCGACCCTCGCCAGTACCGGCACCCCGGCCTTTTTCGTACATCCGGCAGAGGCGCTG CATGGCGATCTGGGAATGATCGAAAGCCGCGACGTGATGCTGTTTATCTCCTACTCCGGCGGCGCCAAAGAGCTGGATCT GATCATCCCGCGCCTGGAAGATAAATCCATTGCCCTGCTGGCGATGACCGGTAAGCCCGGCTCGCCGCTGGGGCTGGCGG CGAAAGCCGTTCTGGACATTTCGGTTGAACGCGAGGCCTGTCCGATGCACCTGGCGCCAACCTCCAGCACCGTCAACACC CTGATGATGGGCGACGCGCTGGCAATGGCGGTAATGCAGGCGCGCGGCTTCAGCGAAGAGGATTTTGCCCGCTCGCACCC GGCTGGCGCGCTCGGCGCCCGGCTGCTTAACAAGGTGCATCACCTGATGCGTCGTGACGACGCGGTGCCGCAGGTGCAGC TGTCCGCCAGCGTAATGGACGCCATGCTTGAGTTAAGCCGTACCGGACTCGGTCTGGTCGCCGTCTGCGACGCGCAACAG CAGGTGAACGGCGTCTTTACCGACGGCGACCTGCGCCGCTGGCTGGTCGGCGGCGGCGCGCTCACCACGCCGGTCAGCGA AGCGATGACCCGCAACGGCATCACGCTTCAGGCTGACAGTCGCGCCATTGACGCCAAAGAGATCCTGATGAAGCGCAAAA TCACCGCCGCGCCGGTGGTTGATGAAAACGGCAAGCTCACCGGCGCCATCAACCTGCAGGACTTTTATCAGGCCGGGATC CTCTAG Protein sequence : MSDALLNAGRQTLLLELQEASRLPERLGDDFVRAANTIIHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEAL HGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPGSPLGLAAKAVLDISVEREACPMHLAPTSSTVNT LMMGDALAMAVMQARGFSEEDFARSHPAGALGARLLNKVHHLMRRDDAVPQVQLSASVMDAMLELSRTGLGLVAVCDAQQ QVNGVFTDGDLRRWLVGGGALTTPVSEAMTRNGITLQADSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGI L |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 1e-44 | 42 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 6e-45 | 42 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 2e-44 | 42 |
