Gene Information

Name : sitA (ROD_30781)
Accession : YP_003366582.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : iron ABC transporter substrate-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3246487 - 3247404 bp
Length : 918 bp
Strand : -
Note : -

DNA sequence : 
ATGCCGCACCTGCACCGTTTGACGTCGTATCTGCTGACTGGCGCACTTGCCTTCTTTACGCTGACGCCCGCCAGCGCCAG
TGAAAAATTTAAGGTGATCACCACCTTTACGGTTATCGCTGACATGGCGCAAAACGTCGCAGGCGATGCCGCAGAGGTCA
GCTCCATTACAAAACCCGGCGCGGAGATCCATGAATACCAGCCGACGCCCGGCGACATTAAACGCGCGCAAGGCGCACAG
CTGATCCTCTCTAACGGACTGAATCTGGAGCTATGGTTTGCCCGTTTTTATCAGCACTTGTCTGGCGTGCCGGAGGTGAC
GGTTTCCGATGGCGTGCAGCCGATGGGCATCAGCGAAGGCCCCTATAACGGCAAACCGAATCCGCACGCGTGGATGTCGG
CGGAAAACGCGCTGATCTACGTCGATAATATTCGCGATGCGCTGGCGAAATACGACCCGAAACACGCCGCCATCTACCAG
AAAAACGCCGACGCCTATAAGGCGAAAATCCGCCAGACGCTGGCCCCGCTACAGGCCAGACTGGCAAAAATACCGGCCGA
CAGACGCTGGCTGGTCACCAGCGAAGGGGCGTTTTCCTACCTTGCGCGCGATAACGCACTGAAAGAGCTGTATTTGTGGC
CGATCAACGCCGATCAGCAGGGTACGCCAAAGCAGGTGCGTAAAGTGATCGACACAATCAAAGCGCATCAAATCCCGGCC
ATCTTCAGTGAAAGCACCGTCTCCGATAAACCGGCGCGCCAGGTGGCGCGTGAGTCCGGTGCGCACTACGGCGGCGTGCT
GTATGTCGACTCCCTGAGCGCCGCCGACGGCCCGGTGCCGACCTATCTCGATCTGCTTCGCGTCACAACCGAAACCATCG
TCAAGGGGATTAACGACGGACTGGGGAGTCAAAAATGA

Protein sequence : 
MPHLHRLTSYLLTGALAFFTLTPASASEKFKVITTFTVIADMAQNVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQ
LILSNGLNLELWFARFYQHLSGVPEVTVSDGVQPMGISEGPYNGKPNPHAWMSAENALIYVDNIRDALAKYDPKHAAIYQ
KNADAYKAKIRQTLAPLQARLAKIPADRRWLVTSEGAFSYLARDNALKELYLWPINADQQGTPKQVRKVIDTIKAHQIPA
IFSESTVSDKPARQVARESGAHYGGVLYVDSLSAADGPVPTYLDLLRVTTETIVKGINDGLGSQK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-118 86
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 8e-119 86
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 8e-119 86
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 8e-119 86
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 6e-119 86

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA YP_003366582.1 iron ABC transporter substrate-binding protein BAC0349 Protein 4e-119 86
sitA YP_003366582.1 iron ABC transporter substrate-binding protein BAC0439 Protein 3e-90 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA YP_003366582.1 iron ABC transporter substrate-binding protein VFG0525 Protein 4e-119 86