Gene Information

Name : sitB (ROD_30771)
Accession : YP_003366581.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : iron ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3245675 - 3246490 bp
Length : 816 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTCAACCGGCGATTACCGTGAATCAACTGACGGTGACGTATCGCAACGGGCATACTGCGCTGCGTGACGCAACCTT
TCAGGTGCCGGGCGGCTCCATTGCCGCGCTGGTAGGGATAAACGGCTCGGGAAAATCGACGCTGTTTAAAGCGCTGATGG
GGTTTGTCCGGCTTGCGCAGGGAGAAATCTCCATCCTGCAACAGCCGGTGAACAAAGCGCTGAAGCAAAACCTGATCGCC
TACGTACCGCAGTCTGAAGAGGTGGACTGGTCGTTTCCGGTGCTGGTGGAAGATGTGGTAATGATGGGACGTTACGGCCA
TATGGGCTGGCTGCGGCGGGCGAAAGCGGAGGATCGTGCGCGCGTGGAGGCGGCGCTGGCGCGAGTGGATATGCTGGAAT
ACCGCCACCGCCAGATTGGCGAGCTTTCCGGCGGGCAGAAAAAGCGCGTTTTTCTCGCCAGAGCCATCGCCCAGGACGGG
CAGGTCATCCTGCTGGATGAGCCTTTTACCGGCGTGGACGTCAAAACCGAAGCCCGCATTGTCGCGCTGCTGCGTGAGCT
GCGCGACGAAGGGCGTACCATGCTGGTATCCACGCATAATCTCGGTTCGGTGACAGAGTTTTGCGATTACACGGTGATGA
TCAAAGGCACCGTGCTGGCAAGCGGTCCTACCGAAACCACCTTCACTACTGCGAACCTCGAACGGGCGTTCAGCGGCGTG
CTGCGCCACGTCGCGCTGAGCGGCGGCGAAGAGCATATTATTACCGATGACGAACGTCCGTTTATCTCTCAGCGCGCGGC
GGGAGAAGGATCGTGA

Protein sequence : 
MSQPAITVNQLTVTYRNGHTALRDATFQVPGGSIAALVGINGSGKSTLFKALMGFVRLAQGEISILQQPVNKALKQNLIA
YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKAEDRARVEAALARVDMLEYRHRQIGELSGGQKKRVFLARAIAQDG
QVILLDEPFTGVDVKTEARIVALLRELRDEGRTMLVSTHNLGSVTEFCDYTVMIKGTVLASGPTETTFTTANLERAFSGV
LRHVALSGGEEHIITDDERPFISQRAAGEGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-118 92
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 8e-118 91
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-117 91
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 4e-116 90
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 4e-116 90

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_003366581.1 iron ABC transporter ATP-binding protein BAC0350 Protein 5e-118 91
sitB YP_003366581.1 iron ABC transporter ATP-binding protein BAC0440 Protein 9e-81 63
sitB YP_003366581.1 iron ABC transporter ATP-binding protein BAC0400 Protein 1e-49 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB YP_003366581.1 iron ABC transporter ATP-binding protein VFG0526 Protein 4e-118 91