Gene Information

Name : sitC (ROD_30761)
Accession : YP_003366580.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3244818 - 3245678 bp
Length : 861 bp
Strand : -
Note : -

DNA sequence :
GTGATGAACTGGCTGATCGAACCGTTTGGCTATCAGTACATGCTCAACGCGATGTGGGTTTCGGCGATGGTCGGCGGCCT
GTGCGCCTTTCTCTCCTGTTATTTAATGCTCAAAGGCTGGTCGCTGATTGGCGATGCGCTGTCGCACTCCATCGTTCCCG
GCGTCGCCGGCGCGTGGATGCTGGGCCTGCCCTTCTCGCTCGGCGCCTTTCTCTCCGGCGGGCTGGCGGCGGGCAGTATG
CTGTTTCTCAGCCAGCGCTCGCGGCTAAAAGAAGATGCCATTATCGGGCTGATTTTTTCCTCGTTCTTCGGCATCGGGCT
GTTTATGGTCTCGCTGAATCCGATGTCGGTGAATATTCAGACCATTATCCTCGGCAACGTGCTGGCTATCGCGCCGGAAG
ATATTGTGCAGCTGGCGATTATCGGCACGGTCTCCCTGCTCATTCTGCTGGTGAAATGGAAAGACCTGATGGTCACTTTT
TTCGATGAAAACCACGCCCGCTCGATTGGCCTGCATCCGGGTCGCCTGAAGCTACTGTTTTTCACTCTGCTGTCGGTCTC
CACCGTTGCCGCGCTGCAAACCGTTGGCGCTTTTCTGGTGATCTGTCTTGTCGTGACGCCCGGCGCAACGGCCTGGCTGC
TGACCGATCGTTTTCCGCGCTTACTTGCCGCTGCCGTCGCCATTGGTAGCCTGACCAGTTTTCTCGGCGCCTGGCTCAGC
TACTGGCTGGATGGCGCCACCGGCGGGATTATCGTGGTTCTGCAAACGCTGCTGTTTCTGCTGGCGTTTATCTTCGCGCC
GAAACACGGCCTGCTCGCTAACCGTCGTCGCGCGCGACTTAAGGAGCCATCATGTTCCTGA

Protein sequence :
MMNWLIEPFGYQYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAWMLGLPFSLGAFLSGGLAAGSM
LFLSQRSRLKEDAIIGLIFSSFFGIGLFMVSLNPMSVNIQTIILGNVLAIAPEDIVQLAIIGTVSLLILLVKWKDLMVTF
FDENHARSIGLHPGRLKLLFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLAAAVAIGSLTSFLGAWLS
YWLDGATGGIIVVLQTLLFLLAFIFAPKHGLLANRRRARLKEPSCS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-98 94
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-98 94
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 9e-99 94
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-98 94
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-98 94
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 8e-34 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-33 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-33 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-33 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_003366580.1 iron ABC transporter permease BAC0351 Protein 6e-99 94
sitC YP_003366580.1 iron ABC transporter permease BAC0441 Protein 6e-68 68
sitC YP_003366580.1 iron ABC transporter permease BAC0352 Protein 5e-34 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC YP_003366580.1 iron ABC transporter permease VFG0527 Protein 5e-99 94
sitC YP_003366580.1 iron ABC transporter permease VFG0528 Protein 4e-34 42