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Name : sitD (ROD_30751) Accession : YP_003366579.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : iron ABC transporter permease Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG1108 EC number : - Position : 3243961 - 3244827 bp Length : 867 bp Strand : - Note : - DNA sequence : ATGTTCCTGACCACGCTGCTGGAACCCTTTCAGTTCGACTTTATGCTGAATGCGCTTACCGTCTCCGCCATTGTGGCGGT CCCCTGCGCGCTGCTGTCAGTCTTCCTGGTGCTGAAAGGCTGGGCTTTAATGGGGGACGCCATGAGCCACGCGGTATTTC CGGGCATTGTGCTGGCGTATATCATCGGGCTTCCGCTGGCCGTCGGCGCGTTTATCGCCGGACTCTTCTGCGCGGTCGCT ACGGGATATCTCGACGATAACAGTCGAATCAAGCGCGATACCATTATGGGGATCGTCTTCTCGGGAATGTTTGGCGCGGG TCTGGTGCTGTACGTTTCTATCCAGTCAGAGGTGCATCTGGACCACATTTTGTTTGGCGACATGCTTGGGGTATCGCTGA ACGATATCCTGCAAACCGCGCTGATTGCGCTGGGGATCGCGCTGATCGTCAGCATGAAGTGGAAAGATCTGCTGCTGCAC GCCTTTGATCCGCATCAGGCCAAAGCCAGCGGCCTGAACGTCGTGCTGCTGCATTACGGGCTGCTGTGCATGATTGCGCT GACCATCGTGGCGACGCTGAAATCGGTCGGTATTATTCTGTCGATCTCTTTGCTGATAGCGCCGGGGGCGATTGCTGTCT TACTGACCCGCCGCTTTGCCCGCGCGCTGTTGCTGGCGGTCGCGCTGTCGGTGACGACGTCATTTCTCGGCGTTTATCTG TCGTTTTTTCTCGACAGCGCGCCTGCACCGACCATCGTGGTGCTGTTCACGGTGATATTTGTGGCGGCATTTATTTATGC GACGCTACGCGATCGACGTTCAGAAATGCGGCAACAACGCTCTCTCTCAGTTTCAGAAACGGAATGA Protein sequence : MFLTTLLEPFQFDFMLNALTVSAIVAVPCALLSVFLVLKGWALMGDAMSHAVFPGIVLAYIIGLPLAVGAFIAGLFCAVA TGYLDDNSRIKRDTIMGIVFSGMFGAGLVLYVSIQSEVHLDHILFGDMLGVSLNDILQTALIALGIALIVSMKWKDLLLH AFDPHQAKASGLNVVLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAVLLTRRFARALLLAVALSVTTSFLGVYL SFFLDSAPAPTIVVLFTVIFVAAFIYATLRDRRSEMRQQRSLSVSETE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sitD | NP_461785.1 | permease | Virulence | SPI-1 | Protein | 3e-97 | 88 |
| sitD | AAD41068.1 | SitD | Virulence | centisome 63 pathogenicity island | Protein | 2e-97 | 88 |
| sitD | NP_457258.1 | Iron transport protein, inner membrane component | Virulence | SPI-1 | Protein | 8e-97 | 87 |
| sitD | NP_806467.1 | iron transporter inner membrane protein | Virulence | SPI-1 | Protein | 8e-97 | 87 |
| sitD | YP_217784.1 | iron transporter: fur regulated | Virulence | SPI-1 | Protein | 6e-97 | 87 |
| sitC | AAD41067.1 | SitC | Virulence | centisome 63 pathogenicity island | Protein | 1e-35 | 42 |
| sitC | YP_217783.1 | iron transporter: fur regulated | Virulence | SPI-1 | Protein | 2e-35 | 42 |
| sitC | NP_461784.1 | permease | Virulence | SPI-1 | Protein | 2e-35 | 42 |
| sitC | NP_457257.1 | Iron transport protein, inner membrane component | Virulence | SPI-1 | Protein | 2e-35 | 42 |
| sitC | NP_806466.1 | iron transporter inner membrane protein | Virulence | SPI-1 | Protein | 2e-35 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sitD | YP_003366579.1 | iron ABC transporter permease | BAC0352 | Protein | 1e-97 | 88 |
| sitD | YP_003366579.1 | iron ABC transporter permease | BAC0442 | Protein | 1e-56 | 52 |
| sitD | YP_003366579.1 | iron ABC transporter permease | BAC0351 | Protein | 8e-36 | 42 |
| sitD | YP_003366579.1 | iron ABC transporter permease | BAC0441 | Protein | 2e-36 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sitD | YP_003366579.1 | iron ABC transporter permease | VFG0528 | Protein | 1e-97 | 88 |
| sitD | YP_003366579.1 | iron ABC transporter permease | VFG0527 | Protein | 7e-36 | 42 |
