Gene Information

Name : ROD_30141 (ROD_30141)
Accession : YP_003366521.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3179616 - 3179834 bp
Length : 219 bp
Strand : -
Note : -

DNA sequence : 
ATGATAACGATAACTGAACTGGAAGATGAAATAATAAAAAATAAAAAATCAGCAAATATTTTTATTGAAAAAATAAATGA
TAAAAAAAATGAAATCCACGAAAAAATGAAAAAACCTTTGGATAAGGTCACTTACAATGAAGCAAAGGAACTGCTCATTG
CATGCGATGCGGCAATTAAGGTCATTGAGATAATGGTAATCAGATTGAATAGAGGATGA

Protein sequence : 
MITITELEDEIIKNKKSANIFIEKINDKKNEIHEKMKKPLDKVTYNEAKELLIACDAAIKVIEIMVIRLNRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06350.1 unknown Not tested LEE Protein 1e-26 100
unnamed AAL57585.1 unknown Not tested LEE Protein 3e-23 90
st06 CAC81844.1 ST06 protein Not tested LEE II Protein 3e-23 90
ECO103_3637 YP_003223494.1 T3SS component Virulence LEE Protein 5e-23 90
unnamed CAI43892.1 hypothetical protein Not tested LEE Protein 3e-23 90
ECO26_5252 YP_003232134.1 T3SS component Virulence LEE Protein 5e-23 90
unnamed AAK26697.1 unknown Not tested LEE Protein 3e-23 90
unnamed AAL57524.1 unknown Not tested LEE Protein 3e-23 90
Z5139 NP_290287.1 hypothetical protein Not tested LEE Protein 3e-22 89
unnamed AAC38365.1 Orf2 Not tested LEE Protein 2e-22 89
unnamed AAC31532.1 L0053 Not tested LEE Protein 2e-22 89
unnamed ACU09477.1 type III secretion system protein YseE family Virulence LEE Protein 2e-22 89
ECO111_3771 YP_003236107.1 T3SS component Virulence LEE Protein 3e-22 89
ECs4587 NP_312614.1 hypothetical protein Not tested LEE Protein 3e-22 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROD_30141 YP_003366521.1 T3SS component VFG0831 Protein 7e-23 89
ROD_30141 YP_003366521.1 T3SS component VFG0711 Protein 7e-23 89