Gene Information

Name : ROD_30131 (ROD_30131)
Accession : YP_003366520.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3179296 - 3179619 bp
Length : 324 bp
Strand : -
Note : -

DNA sequence : 
ATGAATATTGTGAAGCAAACAAAAAACAAAGAGTTATTAGATAAAAAAATAAGATCAGAGATTGAGACAATAAAAAAAAT
AATTGCTGAATTTGATGTTATAAAAGAAAACGTTAATATATTAAGTGAAAAGGCAAAAACATCCCCTCAAGCTGCGGAAA
CTTTAAACAAATTAATTGAAGGATATACATATGGTGAAGAGAGAAGATTATATGATTCCGCTTTAAGTAAGATAGAGAAA
TTAATAGAGACAATGAAACCTACAAGATCTGGAAGTCAATTAACAAAGAATCAGCGTAATAAAAACAATAGAAAAATAGT
ATGA

Protein sequence : 
MNIVKQTKNKELLDKKIRSEIETIKKIIAEFDVIKENVNILSEKAKTSPQAAETLNKLIEGYTYGEERRLYDSALSKIEK
LIETMKPTRSGSQLTKNQRNKNNRKIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06351.1 unknown Not tested LEE Protein 4e-43 100
ECO103_3636 YP_003223493.1 T3SS component Virulence LEE Protein 1e-35 87
ECO26_5253 YP_003232135.1 T3SS component Virulence LEE Protein 1e-35 87
unnamed AAC38366.1 Orf3 Not tested LEE Protein 1e-36 85
unnamed AAC31531.1 L0052 Not tested LEE Protein 1e-36 85
ECO111_3770 YP_003236106.1 T3SS component Virulence LEE Protein 2e-36 85
Z5138 NP_290286.1 hypothetical protein Not tested LEE Protein 2e-36 85
ECs4586 NP_312613.1 hypothetical protein Not tested LEE Protein 2e-36 85
unnamed ACU09476.1 conserved hypothetical protein Not tested LEE Protein 3e-36 84
cesA AFO66338.1 hypothetical protein Not tested SESS LEE Protein 6e-14 46
cesA AFO66397.1 hypothetical protein; possible LEE-encoded type III secretion system factor Not tested SESS LEE Protein 6e-14 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROD_30131 YP_003366520.1 T3SS component VFG0830 Protein 6e-37 85
ROD_30131 YP_003366520.1 T3SS component VFG0712 Protein 6e-37 85