Gene Information

Name : ROD_30121 (ROD_30121)
Accession : YP_003366519.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3178700 - 3179299 bp
Length : 600 bp
Strand : -
Note : -

DNA sequence : 
ATGACAATTTTGAATAAAATAGACTATAGCTACTATAAATTAATTAACTATCCTCTCATGATGATTCATGATGAATGGCT
AGGTGATTTAACCGGTGTCAATCAGGGCTGTTTTCGACGTCTAAGAGAAAATAGTTCTACACGTAATCAACTAAATAGGA
TTATACGTCAGGATATTCAAAGTAAAATAGCTGGTGCAGAATTATCAAATATAAATAAGGATAGTTTTCTATATCAGTCA
ATTGGTAAAATAAGATTGCTTGCTTTAAGTAGTGCATTATTTGAAATTCAATGTCCTGATTATATTTTTTCACGAGTATA
TAGAGAGAATCTGATTGAAGAGATAGGATATCAAAATGTGAAACAGTTATCATTCTATTGGCAGGGAGGACAATGTAAAC
CAGAATATGGCGAAGATCGGTTCTGTTCGGAGCTAATAAAATATGGTGCAGGAAATCTGGAATGGTTATTCTCTGATAAT
CCATTATGGGCAATAGTTAAATATCTTTTACCGAAAAGCGGAGAAATAAAGCCAGTTCATATTAATGGTATATTTCTTAA
TAAACTTAATAAAATTTTACTGCCTTATGAAACTTTATGA

Protein sequence : 
MTILNKIDYSYYKLINYPLMMIHDEWLGDLTGVNQGCFRRLRENSSTRNQLNRIIRQDIQSKIAGAELSNINKDSFLYQS
IGKIRLLALSSALFEIQCPDYIFSRVYRENLIEEIGYQNVKQLSFYWQGGQCKPEYGEDRFCSELIKYGAGNLEWLFSDN
PLWAIVKYLLPKSGEIKPVHINGIFLNKLNKILLPYETL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06352.1 unknown Not tested LEE Protein 7e-90 99
st07 CAC81845.1 ST07 protein Not tested LEE II Protein 5e-84 88
unnamed CAI43891.1 hypothetical protein Not tested LEE Protein 5e-84 88
unnamed AAK26698.1 unknown Not tested LEE Protein 5e-84 88
unnamed AAL57525.1 unknown Not tested LEE Protein 5e-84 88
ECO103_3635 YP_003223492.1 T3SS component Virulence LEE Protein 8e-84 88
unnamed AAL57586.1 unknown Not tested LEE Protein 5e-84 88
ECO26_5254 YP_003232136.1 T3SS component Virulence LEE Protein 8e-84 88
unnamed AAC31530.1 L0051 Not tested LEE Protein 1e-83 86
unnamed ACU09475.1 conserved hypothetical protein Not tested LEE Protein 1e-83 86
Z5137 NP_290285.1 hypothetical protein Not tested LEE Protein 2e-83 86
unnamed AAC38367.1 Orf4 Not tested LEE Protein 1e-83 86
ECs4585 NP_312612.1 hypothetical protein Not tested LEE Protein 2e-83 86
ECO111_3769 YP_003236105.1 T3SS component Virulence LEE Protein 1e-83 86
SESS1635_03846 AFO66398.1 hypothetical protein; possible LEE-encoded type III secretion system factor Not tested SESS LEE Protein 2e-56 54
SESS1296_03631 AFO66318.1 hypothetical protein; possible LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-55 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROD_30121 YP_003366519.1 T3SS component VFG0713 Protein 4e-84 86
ROD_30121 YP_003366519.1 T3SS component VFG0829 Protein 4e-84 86