Gene Information

Name : ROD_30111 (ROD_30111)
Accession : YP_003366518.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3178057 - 3178755 bp
Length : 699 bp
Strand : -
Note : -

DNA sequence : 
ATGGTATATTTCTTAATAAACTTAATAAAATTTTACTGCCTTATGAAACTTTATGAATATAAAAATATAAAAATTATTGA
CTTAGTGCTTACGGAAGATGTTGTAGCTGAAAGTAAGCTGCAGGAAATTTTCCAAACTGATAACATTATCAAACTGACTC
GAAAAAGAACATGCGAACATTTACTGAGGATTAGGAGGAAAACGAAACAGTTAAAGATAGAATCAAGAAAAAAAATTGCA
AAAAAAATGTTATCAATGAGAGAAAGAGAACGCAAATACAAAAAAATAAAATTAGAAAAAGAGATTAATAATTCGGTGAA
ATGGGTTAAAGATATCCAGGATATCGAGTTGGTTTTAATACAAGATATAATGAATAAAATTCATTTGACACTAACTGATG
CATTGCATTCTTTAGATACATCATCAAGAATTAATTGGGATGCCTTACTTAATGAAGTCGTAAGAGAGGCGATTTCTCAT
AATAATATTGTAGGGGCTATTAAGATCACTAAAAACCCAGACGTTAATATTGACCTCGGTGAGGGTAAGAATTTAGAGTT
TATTGATGATTTAAATATACCAGTTAATCAGATAATAATAGAAAATGAATATATAAGAATAACTTTAGATCCGTTAGAGC
AAATTAATATCTTATTAAATTCATTTAAAGAGAGTTATTTGAGTATTATTCAGGAATAA

Protein sequence : 
MVYFLINLIKFYCLMKLYEYKNIKIIDLVLTEDVVAESKLQEIFQTDNIIKLTRKRTCEHLLRIRRKTKQLKIESRKKIA
KKMLSMRERERKYKKIKLEKEINNSVKWVKDIQDIELVLIQDIMNKIHLTLTDALHSLDTSSRINWDALLNEVVREAISH
NNIVGAIKITKNPDVNIDLGEGKNLEFIDDLNIPVNQIIIENEYIRITLDPLEQINILLNSFKESYLSIIQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06353.1 unknown Not tested LEE Protein 3e-102 99
unnamed ACU09474.1 conserved hypothetical protein Not tested LEE Protein 7e-77 77
unnamed AAL57587.1 unknown Not tested LEE Protein 5e-85 77
ECO103_3634 YP_003223491.1 T3SS component Virulence LEE Protein 2e-84 77
st08 CAC81846.1 ST08 protein Not tested LEE II Protein 5e-85 77
ECO26_5255 YP_003232137.1 T3SS component Virulence LEE Protein 1e-84 77
unnamed CAI43890.1 hypothetical protein Not tested LEE Protein 5e-85 77
unnamed AAC31529.1 L0050 Not tested LEE Protein 4e-84 77
unnamed AAC38368.1 Orf5 Not tested LEE Protein 1e-84 77
unnamed AAK26699.1 unknown Not tested LEE Protein 5e-85 77
ECs4584 NP_312611.1 hypothetical protein Not tested LEE Protein 6e-84 77
unnamed AAL57526.1 unknown Not tested LEE Protein 5e-85 77
ECO111_3768 YP_003236104.1 T3SS component Virulence LEE Protein 3e-84 77
Z5136 NP_290284.1 hypothetical protein Not tested LEE Protein 1e-71 76
escL AFO66399.1 putative LEE-encoded putative type III secretion system factor Not tested SESS LEE Protein 2e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ROD_30111 YP_003366518.1 T3SS component VFG0714 Protein 8e-85 77
ROD_30111 YP_003366518.1 T3SS component VFG0828 Protein 4e-72 76