Gene Information

Name : escR (ROD_30101)
Accession : YP_003366517.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS structural protein EscR
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 3177399 - 3178052 bp
Length : 654 bp
Strand : -
Note : -

DNA sequence : 
ATGACTCAGTTAATGACCATTGGCTCACAGCCAATATTTTTAATTGTTGTTTTTTTCTTTTTTTCATTACTGCCAATATT
TGTTGTTATTGGAACTTCATTTCTGAAAATTTCGATTGTATTAGGGATACTGAAGAACGCATTAGGTATTCAACAAGTAC
CACCAAACATGGCATTAACATCAGTATCTCTGATACTTACTATATTTATTATGTCTCCAATAATATTACAGATTAATGAT
AATATATCTCAGGAGCCGATAAACTATACTGACTCTGATTTTTATCAAAAAGTTGATGGGAAAATAATATCACCATACCG
TATTTTTTTAGAAAATAACACTAATAAAGAAAATATTGATTTTTTTGAAAATGTTGCCAAGAAAAAATTGGGTAATGAAA
CTTCTTTAAAAAAAGACTCACTTTTTATACTGTTACCGGCTTTCACTATGGGACAGCTTGAAGCCGCATTTAAGATAGGA
TTTTTACTTTACTTACCCTTTATCGCTATAGATTTAATCATTTCCAATATCTTATTGGCCTTGGGTATGATGATGGTATC
GCCAGTAACAATTTCGATACCTTTTAAGATCTTGCTATTCATTCTTATTGGTGGTTGGCAAAAATTATTTGAATTTCTTT
TGGTGGTGAATTGA

Protein sequence : 
MTQLMTIGSQPIFLIVVFFFFSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTIFIMSPIILQIND
NISQEPINYTDSDFYQKVDGKIISPYRIFLENNTNKENIDFFENVAKKKLGNETSLKKDSLFILLPAFTMGQLEAAFKIG
FLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILIGGWQKLFEFLLVVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06354.1 EscR Virulence LEE Protein 7e-84 100
escR AAC31528.1 L0049 Virulence LEE Protein 6e-79 92
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 9e-79 92
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 6e-79 92
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 9e-79 92
escR AAK26700.1 EscR Virulence LEE Protein 5e-79 92
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 8e-79 92
escR AAL57527.1 EscR Virulence LEE Protein 5e-79 92
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 8e-79 92
escR CAC81847.1 EscR protein Virulence LEE II Protein 5e-79 92
escR CAI43889.1 EscR protein Virulence LEE Protein 5e-79 92
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-78 91
escR AAC38369.1 EscR Virulence LEE Protein 4e-78 91
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-72 80
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-72 80
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-44 52
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-44 52
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-44 52
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-44 52
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-44 52
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-46 52
lscR AAO18040.1 LscR Virulence TTSS locus Protein 5e-44 50
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-37 46
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-32 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-32 45
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 3e-32 45
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 3e-32 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 7e-36 44
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 7e-36 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 7e-36 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-31 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-31 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-36 44
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-32 44
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-32 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-33 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-34 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-33 42
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 5e-34 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-34 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-34 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 8e-34 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-34 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-33 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-33 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 8e-34 41
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
escR YP_003366517.1 T3SS structural protein EscR VFG0827 Protein 3e-79 92
escR YP_003366517.1 T3SS structural protein EscR VFG0715 Protein 2e-78 91
escR YP_003366517.1 T3SS structural protein EscR VFG0519 Protein 5e-45 52
escR YP_003366517.1 T3SS structural protein EscR VFG0188 Protein 1e-41 49
escR YP_003366517.1 T3SS structural protein EscR VFG0394 Protein 2e-42 48
escR YP_003366517.1 T3SS structural protein EscR VFG0044 Protein 7e-40 47
escR YP_003366517.1 T3SS structural protein EscR VFG0551 Protein 1e-32 44
escR YP_003366517.1 T3SS structural protein EscR VFG1773 Protein 5e-39 44
escR YP_003366517.1 T3SS structural protein EscR VFG1012 Protein 4e-35 43
escR YP_003366517.1 T3SS structural protein EscR VFG2016 Protein 9e-31 41