Gene Information

Name : escS (ROD_30092)
Accession : YP_003366516.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS structural protein EscS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 3177130 - 3177399 bp
Length : 270 bp
Strand : -
Note : -

DNA sequence : 
ATGGGTACTGGATATTTTGTTCAATTATGTGTGCAAACACTATGGATTATATTCATCCTGTCATTGCCGACAGTCATTGC
AGCCTCTGTAATTGGTATTATTATTAGCTTAATCCAGGCTATAACGCAATTGCAAGATCAAACATTGCCTTTTTTGCTGA
AAATAATAGCAGTATTTGCTACACTTGCTCTGACTTATCACTGGATGGGTACAACAATCATAAACTTCTCATCAATAATA
TTTGAAATGATTCCAAAGGTGAATGGTTAA

Protein sequence : 
MGTGYFVQLCVQTLWIIFILSLPTVIAASVIGIIISLIQAITQLQDQTLPFLLKIIAVFATLALTYHWMGTTIINFSSII
FEMIPKVNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06355.1 EscS Virulence LEE Protein 3e-25 100
escS AAK26701.1 EscS Virulence LEE Protein 8e-25 97
escS AAL57528.1 EscS Virulence LEE Protein 8e-25 97
escS CAC81848.1 EscS protein Virulence LEE II Protein 8e-25 97
escS YP_003236102.1 T3SS structure protein EscS Virulence LEE Protein 5e-24 97
escS NP_290282.1 hypothetical protein Virulence LEE Protein 5e-24 97
escS AAC38370.1 EscS Virulence LEE Protein 3e-24 97
ECs4582 NP_312609.1 EscS Virulence LEE Protein 5e-24 97
escS AAC31527.1 L0048 Virulence LEE Protein 3e-24 97
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 1e-24 97
escS ACU09472.1 hypothetical protein Not tested LEE Protein 3e-24 97
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 1e-24 97
escS CAI43888.1 EscS protein Virulence LEE Protein 1e-24 97
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-20 86
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-20 86
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 7e-04 43
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 0.001 43
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 0.001 43
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 0.001 43
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 0.001 43
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 0.002 43
lscS AAO18039.1 LscS Virulence TTSS locus Protein 2e-05 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
escS YP_003366516.1 T3SS structural protein EscS VFG0826 Protein 1e-24 97
escS YP_003366516.1 T3SS structural protein EscS VFG0716 Protein 1e-24 97
escS YP_003366516.1 T3SS structural protein EscS VFG0520 Protein 3e-04 43