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Name : ROD_30071 (ROD_30071) Accession : YP_003366513.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : LEE-encoded protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0741 EC number : - Position : 3174866 - 3175327 bp Length : 462 bp Strand : + Note : - DNA sequence : ATGAAAGCAAAAAAAATATTAAGTATCATTCTTATCACTAACTTTTGCTATGCTTCTGATTGTTTTGAAACAACTGGAAA AGCATATAACATTGATCCATTAATATTAAAATCCATTGCATGGAATGAGTCAAGAAACAAAAGTGGAATAAAAAGCAAAA TAAATAAAAATGGAACCTATGATATAGGGATAATGCAAATAAACTCATCCCATTTAGACCTATTAAGTAAATTTAACATA TCCGAAAATGATTTATTAAATGATGATTGCATAAATATAACTGTCGCTGGTTATATTTTAGCTTCCAACATAAAATCTAG AGGGAATACGTGGGATGCCGTGGGTGCATACAATGCTGGTTATTTTAACACACCAAATGCTGTAGAACTCAGAAGGCAAT ATGCGATGAAAATATACAACACATATACTAAACTAAAAAATAATGAACCAATAATGGATTAA Protein sequence : MKAKKILSIILITNFCYASDCFETTGKAYNIDPLILKSIAWNESRNKSGIKSKINKNGTYDIGIMQINSSHLDLLSKFNI SENDLLNDDCINITVAGYILASNIKSRGNTWDAVGAYNAGYFNTPNAVELRRQYAMKIYNTYTKLKNNEPIMD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL06358.1 | unknown | Not tested | LEE | Protein | 1e-58 | 100 |
| unnamed | AAK26704.1 | unknown | Not tested | LEE | Protein | 2e-49 | 93 |
| ECO103_3629 | YP_003223486.1 | hypothetical protein | Not tested | LEE | Protein | 2e-49 | 93 |
| ECO26_5260 | YP_003232142.1 | hypothetical protein | Not tested | LEE | Protein | 2e-49 | 93 |
| unnamed | AAL57531.1 | unknown | Not tested | LEE | Protein | 1e-49 | 93 |
| st13 | CAC81851.1 | ST13 protein | Not tested | LEE II | Protein | 1e-49 | 93 |
| unnamed | CAI43885.1 | hypothetical protein | Not tested | LEE | Protein | 1e-49 | 93 |
| unnamed | ACU09469.1 | putative lytic transglycosylase | Not tested | LEE | Protein | 2e-49 | 91 |
| Z5131 | NP_290279.1 | hypothetical protein | Not tested | LEE | Protein | 3e-49 | 91 |
| ECs4579 | NP_312606.1 | hypothetical protein | Not tested | LEE | Protein | 3e-49 | 91 |
| unnamed | AAC31524.1 | L0045 | Not tested | LEE | Protein | 2e-49 | 91 |
| ECO111_3763 | YP_003236099.1 | hypothetical protein | Not tested | LEE | Protein | 4e-48 | 90 |
| unnamed | AAC38373.1 | rOrf3 | Not tested | LEE | Protein | 3e-47 | 89 |
| etgA | AFO66324.1 | putative lytic transglycosylase | Not tested | SESS LEE | Protein | 2e-36 | 64 |
| etgA | AFO66404.1 | putative lytic transglycosylase | Not tested | SESS LEE | Protein | 2e-36 | 64 |
| iagB | YP_217796.1 | cell invasion protein | Virulence | SPI-1 | Protein | 7e-17 | 41 |
| iagB | NP_461798.1 | invasion protein precursor | Virulence | SPI-1 | Protein | 7e-17 | 41 |
| iagB | NP_457271.1 | cell invasion protein | Virulence | SPI-1 | Protein | 6e-17 | 41 |
| iagB | NP_806480.1 | cell invasion protein | Virulence | SPI-1 | Protein | 6e-17 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ROD_30071 | YP_003366513.1 | LEE-encoded protein | VFG0823 | Protein | 1e-49 | 91 |
| ROD_30071 | YP_003366513.1 | LEE-encoded protein | VFG0719 | Protein | 1e-47 | 89 |
| ROD_30071 | YP_003366513.1 | LEE-encoded protein | VFG0539 | Protein | 2e-17 | 41 |
