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Name : escC (ROD_30001) Accession : YP_003366509.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : T3SS structural protein EscC Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 3170390 - 3171928 bp Length : 1539 bp Strand : + Note : - DNA sequence : ATGAAAAAAATAAGCCTTTTTATTTTTACAGCATTATTTTTTTGCAATACTCAGGCGGCCCCATCCTCTCTGGAAAAAAG ATTAGGCGAGAGCGAGTATTTTATTATTACAAAAAGTTCTCCAGTAAGCGTGATCCTTAATGACTTTGCCGCTAACTACA GCATTCCTGTTTTCATCAGTAATTCTGTGAATGATGATTTCTCTGGCGAAATAAAAAATGAAAAACCAGTAAAAGTATTG GAGAAACTGTCCAAACTTTATCATCTCACATGGTATTATGATGAAAACATCTTGTATATTTATAAAACAAATGAAATATC AAGAAGCATAATTACACCAACATATCTGGATATTGATTCACTGCTAAAATATTTGCGTGATACGATCTCTGTAAACAAAA GTTCCTGTAATGTGAGAAAAATCACGACGTTTAACTCTATTGAAGTTCGGGGCGTTCCAGAATGTATAAAATATATTACA TCTTTATCGGAAAGCCTTGACAAAGAAGCACAATCTAAAGCTAAAAATAAAGATGTCGTTAAAGTCTTTAAATTAAACTA TGCTTCAGCGACAGATATAACATACAAATACCGCGACCAAAATGTTGTCGTGCCTGGCGTCGTCTCTATCCTAAAGACAA TGGCAAGTAATGGTTCACTTCCCAGTACCGGTAAAGGTGCGGTTGAAAGAAGTGGTAATCTGTTCGATAATAGTGTAAAT ATTTCTGCTGATCCACGTCTTAATGCTGTTGTTGTTAAAGACCGTGAAATAACCATGGATATATATCAGCAATTAATTTC TGAGCTTGACATTGAACAAAGGCAAATTGAAATTTCCGTTTCAATTATTGATGTTGATGCAAACGATCTTCAACAGCTAG GTGTAAACTGGTCCGGTACATTAAATGCAGGGCAAAGTTCTATTGCCTTTAATAGCTCTGCAGCACAGGCTAATATTAGT TCCTCTGTGATAAGTAACGCTAGTAATTTCATGATTAGAGTGAATGCGTTACAGCAGAACTCGAAAGCCAAAATACTCTC TCAGCCATCAATTATAACCTTAAATAATATGCAGGCGATTCTTGATAAAAACGTCACGTTTTATACAAAAGTTTCTGGTG AAAAGGTGGCATCGCTGGAAAGTATAACCAGTGGGACATTGCTGAGAGTGACACCACGTATACTTGATGACACCTCGAAT AGTCTTACCGGGAAACGTCGGGAACGAGTTCGTTTGTTACTTGATATTCAGGATGGCAACCAGTCGGTTAACCAAAGCAA TATTCAGAATGCCGGCAGCCTCTTACCCGAAGTCCAAAATTCAGAAATGACAACAGAAGCAACATTAAGCGCAGGAGAAA GTCTGCTACTTGGCGGGTTCATTCAGGATAAAGAAAGTTCAAGTAAAGATGGTATACCGTTGTTAAGCGATATTCCTGTT ATTGGTAGCCTGTTCTCCAGTACGGTAAAACAAAAGCATAGTGTTGTTCGACTCTTTTTAATTAAAGCGACCCCGATAAG ATCTGCATCTAGCGAATAA Protein sequence : MKKISLFIFTALFFCNTQAAPSSLEKRLGESEYFIITKSSPVSVILNDFAANYSIPVFISNSVNDDFSGEIKNEKPVKVL EKLSKLYHLTWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLRDTISVNKSSCNVRKITTFNSIEVRGVPECIKYIT SLSESLDKEAQSKAKNKDVVKVFKLNYASATDITYKYRDQNVVVPGVVSILKTMASNGSLPSTGKGAVERSGNLFDNSVN ISADPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQSSIAFNSSAAQANIS SSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKVSGEKVASLESITSGTLLRVTPRILDDTSN SLTGKRRERVRLLLDIQDGNQSVNQSNIQNAGSLLPEVQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPV IGSLFSSTVKQKHSVVRLFLIKATPIRSASSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL06362.1 | EscC | Virulence | LEE | Protein | 0.0 | 100 |
| escC | AAC31520.1 | L0041 | Virulence | LEE | Protein | 0.0 | 96 |
| escC | ACU09465.1 | type III secretion outer membrane pore YscC/HrcC family | Virulence | LEE | Protein | 0.0 | 96 |
| escC | NP_290275.1 | hypothetical protein | Virulence | LEE | Protein | 0.0 | 96 |
| ECs4575 | NP_312602.1 | EscC | Virulence | LEE | Protein | 0.0 | 96 |
| escC | AAC38377.1 | EscC | Virulence | LEE | Protein | 0.0 | 96 |
| escC | YP_003236095.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 0.0 | 96 |
| escC | AAK26708.1 | EscC | Virulence | LEE | Protein | 0.0 | 95 |
| escC | YP_003223482.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 0.0 | 95 |
| escC | AAL57535.1 | EscC | Virulence | LEE | Protein | 0.0 | 95 |
| escC | YP_003232146.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 0.0 | 95 |
| escC | CAC81855.1 | EscC protein | Virulence | LEE II | Protein | 0.0 | 95 |
| escC | CAI43881.1 | EscC protein | Virulence | LEE | Protein | 0.0 | 95 |
| escC | AFO66299.1 | putative type III complex subunit | Virulence | SESS LEE | Protein | 0.0 | 80 |
| escC | AFO66408.1 | putative type III complex subunit | Virulence | SESS LEE | Protein | 0.0 | 80 |
| YPO0257 | YP_002345337.1 | type III secretion protein | Virulence | Not named | Protein | 4e-107 | 47 |
| spiA | AAC44301.1 | SpiA | Virulence | SPI-2 | Protein | 9e-88 | 44 |
| ssaC | YP_216402.1 | secretion system apparatus protein SsaC | Virulence | SPI-2 | Protein | 2e-87 | 44 |
| ssaC | NP_460359.1 | outer membrane secretin precursor | Virulence | SPI-2 | Protein | 1e-87 | 44 |
| spiA | NP_456134.1 | putative outer membrane secretory protein | Virulence | SPI-2 | Protein | 2e-87 | 44 |
| spiA | NP_805065.1 | outer membrane secretory protein | Virulence | SPI-2 | Protein | 2e-87 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| escC | YP_003366509.1 | T3SS structural protein EscC | VFG0819 | Protein | 0.0 | 96 |
| escC | YP_003366509.1 | T3SS structural protein EscC | VFG0723 | Protein | 0.0 | 96 |
| escC | YP_003366509.1 | T3SS structural protein EscC | VFG0495 | Protein | 5e-88 | 44 |
