Gene Information

Name : sepD (ROD_29991)
Accession : YP_003366508.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS secretion switching protein SepD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3169935 - 3170390 bp
Length : 456 bp
Strand : +
Note : -

DNA sequence : 
ATGAACAATAATAATGGTAGCGCTAAGAATGATAGTGGCTGGTTAACGGCTCTTGATTTTGTAAAGGATGTCAAAGGTTC
ACCAACGCATCTTACTTTTTATATCTACCAAAAAAATGCTTTCTTACACGATTTTGGAAACTATTGGGTTTTATATATCG
AGCTTAGTGGTGATTTTCGCCAGGTTCCAACAGATACATTCATCAAACTCTGCAATATTCTGGCGGTTAGTAAAGAATAT
AAACAAATGGGTATTTTCTTGTCTAATAATAAATGGTATATTTGCCAAATTTTTAATAAAGGTAATAATCATCGAACAAA
CATGTCAAAAACAATAATGCAACATACATTAGCCTCTTTGCTCGATAAGCATTTTAATAAACTAGAGCAATCATCTTCAT
CAGATACAACGTTGTCTCCAACACACTTGTTTTCTGATATAGGACGAATTGTGTAA

Protein sequence : 
MNNNNGSAKNDSGWLTALDFVKDVKGSPTHLTFYIYQKNAFLHDFGNYWVLYIELSGDFRQVPTDTFIKLCNILAVSKEY
KQMGIFLSNNKWYICQIFNKGNNHRTNMSKTIMQHTLASLLDKHFNKLEQSSSSDTTLSPTHLFSDIGRIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06363.1 SepD Virulence LEE Protein 2e-66 99
sepD YP_003236094.1 secretion switching protein SepD Virulence LEE Protein 2e-62 90
Z5125 NP_290274.1 hypothetical protein Not tested LEE Protein 2e-61 89
unnamed AAC31519.1 L0040 Not tested LEE Protein 1e-61 89
ECs4574 NP_312601.1 SepD Virulence LEE Protein 2e-61 89
sepD ACU09464.1 SepD protein Virulence LEE Protein 1e-61 89
unnamed AAC38378.1 rOrf6 Not tested LEE Protein 2e-62 89
unnamed AAK26709.1 unknown Not tested LEE Protein 5e-61 87
sepD YP_003223481.1 secretion switching protein SepD Not tested LEE Protein 7e-61 87
sepD AAL57536.1 SepD Virulence LEE Protein 5e-61 87
sepD YP_003232147.1 secretion switching protein SepD Not tested LEE Protein 7e-61 87
st18 CAC81856.1 ST18 protein Not tested LEE II Protein 5e-61 87
sepD CAI43880.1 SepD protein Virulence LEE Protein 5e-61 87
sepD AFO66409.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 2e-44 57
sepD AFO66325.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 2e-44 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sepD YP_003366508.1 T3SS secretion switching protein SepD VFG0724 Protein 9e-63 89
sepD YP_003366508.1 T3SS secretion switching protein SepD VFG0818 Protein 6e-62 89