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Name : ROD_29971 (ROD_29971) Accession : YP_003366506.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : T3SS component Function : - COG functional category : - COG ID : - EC number : - Position : 3168986 - 3169354 bp Length : 369 bp Strand : + Note : - DNA sequence : ATGAATCAATCAGAAAAGATTAATATTCAGTTAAATAACACGTCCCAAACAAATTTTGTTGATGAGTATACTCCGTTAGC CCCAACCCCATCTGCGGCCGGAGCGGCTCAGTTTCTTGATCAATTACTCCCTAAAACCGCTGGAGTGTCTTCTCCAGAGC GAGTGTTGATTGAGGAAATTAAAAAGAAACATCTTGCAACAATGGACACTAATCGCCGTTTCGATGCACTATCTGCAGGG GAACTGTCAATAGAAGAGTTGCGTATTTTACAAAAGAAAGTGCTCAACGCAAACGTCAACGTTGATGTCCTCTCCAAGTT CGCAAGCCTCCTTTCAACATCGCTTACAAAATTAATTTCACAGCAATAA Protein sequence : MNQSEKINIQLNNTSQTNFVDEYTPLAPTPSAAGAAQFLDQLLPKTAGVSSPERVLIEEIKKKHLATMDTNRRFDALSAG ELSIEELRILQKKVLNANVNVDVLSKFASLLSTSLTKLISQQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL06365.1 | unknown | Not tested | LEE | Protein | 1e-42 | 100 |
| unnamed | AAC38380.1 | rOrf8 | Not tested | LEE | Protein | 2e-31 | 80 |
| unnamed | AAK26711.1 | unknown | Not tested | LEE | Protein | 3e-32 | 80 |
| unnamed | AAL57538.1 | unknown | Not tested | LEE | Protein | 3e-32 | 80 |
| st20 | CAC81858.1 | ST20 protein | Not tested | LEE II | Protein | 3e-32 | 80 |
| unnamed | CAI43878.1 | hypothetical protein | Not tested | LEE | Protein | 3e-32 | 80 |
| ECO103_3622 | YP_003223479.1 | T3SS component | Virulence | LEE | Protein | 4e-32 | 80 |
| rorf8 | YP_003232149.1 | T3SS component | Virulence | LEE | Protein | 4e-32 | 80 |
| unnamed | AAC31517.1 | L0038 | Not tested | LEE | Protein | 3e-26 | 78 |
| unnamed | ACU09462.1 | type III secretion apparatus domain protein YscI/HrpB | Virulence | LEE | Protein | 3e-26 | 78 |
| Z5123 | NP_290272.1 | hypothetical protein | Not tested | LEE | Protein | 4e-26 | 78 |
| ECs4572 | NP_312599.1 | hypothetical protein | Not tested | LEE | Protein | 4e-26 | 78 |
| rorf8 | YP_003236092.1 | chaperone Rorf8 | Not tested | LEE | Protein | 6e-30 | 78 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ROD_29971 | YP_003366506.1 | T3SS component | VFG0726 | Protein | 8e-32 | 80 |
| ROD_29971 | YP_003366506.1 | T3SS component | VFG0816 | Protein | 1e-26 | 78 |
