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Name : escV (ROD_29941) Accession : YP_003366503.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : T3SS structural protein EscV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 3166028 - 3168055 bp Length : 2028 bp Strand : - Note : - DNA sequence : ATGAATAAACTCTTAAATGTATTTGAAAAAGTAGAGTCATATCACGATCTTATTCTGGCTCTCTTCTTCTTTATGGCTGT AATGATGATGATTATTCCACTGCCAACAGTTGTGGTGGATATCATTATCGCGATTAATATCTCGACAGCTTTACTTTTAT TAATGCTCTCAATCTATATAAAAAATCCTCTTGAGCTAACTTCTTTTCCAACAATTCTGTTGATTACGACGTTGATGCGC CTGTCACTCAGTGTCAGTACCACCAGACTTATTCTTTTGCATCATGATGCGGGTGACATTATTTACTCCTTCGGTAACTT TGTTGTTGGCGGTAACATTGTTGTTGGCCTGGTTATTTTTACAATTATCACCATTGTACAATTTATGGTTATTACAAAAG GGGCTGAGCGCGTTGCTGAAGTGAGTGCTCGTTTCTCCCTGGATGGTATGCCAGGGAAACAAATGAGTATTGATGGTGAT ATGCGTGCAGGCGTTATCGATCCGCTTGAGGCAAAAGTTCTTCGTTCCCGTGTACAAAAAGAAAGCCAGTTCTATGGCTC AATGGACGGGGCGATGAAGTTTGTAAAAGGGGACGCTATCGCTGGTATCATCATTGTTTTAGTTAACTTGTTTGGTGGCG TTCTCATTGGTATGTGGCAGTTTGACATGCCATTTAGTGAGGCACTTAGCCTGTTTTCTGTATTGTCGGTTGGTGATGCC CTGGTTGCTCAGATCCCTGCGCTTATTATTTCTGTAACTGCGGGGGTGGTTGTTACTCGTGTTCCCGGTGAAAGCGAAAA AGAAGAAAACCTTGCAGGGGATATTATTCAGCAAGTTTCTGTTAATAGTCGTCCATTTTTGATCAGTGCTGCATTGATGC TTGTAATGGCGATTATCCCTGGTTTTCCTACGTTGGTCTTCTTGTTTTTGGCCGTTTGTTTGCTGGGTATTGCCTGGAAA TTGCAGAAAAAAAGAGCATTTGGATCTACCAATAGTAAAGATTCGCTGGGAGGCGATTTGTCGAATAGCCAAAATGTCTC TCCAGGCGCCGAGCCATTAATTTTAAACTTAAGTAATAATATTTATAGTGCAGATATTACACAGCAAATTGAGGTTGTAC GTTGGGGTTTCTTTGAAGAAAGTGGAATCCCATTGCCTAAGATTATTGTTAATCCGATAAAAAATAATGATAGTGTAGTG GAATTTTTGCTCTATCAAGAGTCAATATACAAAGATACACTGACCAAAGATACTGTTTATTTTGAAGCCGGACACGGAGA TATATCATTTGAGTTTGTTCAGGAAAAAATTTCGATTAACTCTATCGTATATAAAACGAATGAGGCTAACCAACAGCTAG CTCATCTTTCAGGTATGAATGTGTATTCAGAAACAAATGATAAGATAACATTTTTGTTAAAGAAACTTGTATTATCTAAC GCCAAAGAGTTTATTGGTGTACAAGAAACTCGTTATCTGATGGACATCATGGAGAGAAAATATAACGAGCTTGTGAAAGA ACTCCAACGCCAGCTTGGTCTGAGCAAAATTGTCGACATTCTTCAGCGGCTTGTAGAGGAAAATATCTCAATTAGAGATC TTCGAACTATCTTTGAGACACTTATCTTTTGGTCAACAAAAGAAAAAGATGTGGTTATCTTATGTGAATACGTTCGTATT GCTCTCCGTCGGCATATTTTAGGCCGCTATAGTGTTCGTGGTACTATTCTGAATGTTTGGCTTATAGGTTCTGATATTGA AAATGAGCTGCGGGAGTCGATTAGACAAACGTCATCAGGTTCGTATCTGAATATCTCCCCGGAACGGAGTGAGCAGATAA TTGGCTTCTTGAAAAATATCGTGAATCCAACGAGTAACGGCGTCATTCTGACCGCTTTAGATATCAGGCGTTATGTGAAG AAAATGATTGAAGGTTCGTTCCCGTCAGTACCCGTGCTCTCTTTTCAGGAAGTTGGTAATAATATCGAACTGAAAGTATT AGGAACGGTAAATGATTTCAGAGCATAA Protein sequence : MNKLLNVFEKVESYHDLILALFFFMAVMMMIIPLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMR LSLSVSTTRLILLHHDAGDIIYSFGNFVVGGNIVVGLVIFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGD MRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSEALSLFSVLSVGDA LVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIIQQVSVNSRPFLISAALMLVMAIIPGFPTLVFLFLAVCLLGIAWK LQKKRAFGSTNSKDSLGGDLSNSQNVSPGAEPLILNLSNNIYSADITQQIEVVRWGFFEESGIPLPKIIVNPIKNNDSVV EFLLYQESIYKDTLTKDTVYFEAGHGDISFEFVQEKISINSIVYKTNEANQQLAHLSGMNVYSETNDKITFLLKKLVLSN AKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQRLVEENISIRDLRTIFETLIFWSTKEKDVVILCEYVRI ALRRHILGRYSVRGTILNVWLIGSDIENELRESIRQTSSGSYLNISPERSEQIIGFLKNIVNPTSNGVILTALDIRRYVK KMIEGSFPSVPVLSFQEVGNNIELKVLGTVNDFRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 0.0 | 99 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 0.0 | 96 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 0.0 | 96 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 0.0 | 96 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 0.0 | 96 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 0.0 | 96 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 0.0 | 96 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 0.0 | 96 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 0.0 | 95 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 0.0 | 95 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 0.0 | 95 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 0.0 | 95 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 0.0 | 95 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 0.0 | 79 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 0.0 | 79 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 4e-124 | 49 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 1e-132 | 49 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 2e-132 | 49 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 1e-132 | 49 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 4e-132 | 48 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 4e-132 | 48 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-114 | 43 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 3e-96 | 41 |
| invA | NP_457290.1 | possible secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 2e-94 | 41 |
| invA | NP_806499.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 2e-94 | 41 |
| invA | NP_461817.1 | needle complex export protein | Virulence | SPI-1 | Protein | 2e-94 | 41 |
| invA | YP_217815.1 | invasion protein | Virulence | SPI-1 | Protein | 2e-94 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| escV | YP_003366503.1 | T3SS structural protein EscV | VFG0729 | Protein | 0.0 | 95 |
| escV | YP_003366503.1 | T3SS structural protein EscV | VFG0813 | Protein | 0.0 | 95 |
| escV | YP_003366503.1 | T3SS structural protein EscV | VFG0514 | Protein | 6e-133 | 49 |
| escV | YP_003366503.1 | T3SS structural protein EscV | VFG0384 | Protein | 1e-111 | 43 |
| escV | YP_003366503.1 | T3SS structural protein EscV | VFG1006 | Protein | 1e-99 | 42 |
| escV | YP_003366503.1 | T3SS structural protein EscV | VFG0064 | Protein | 9e-111 | 42 |
| escV | YP_003366503.1 | T3SS structural protein EscV | VFG0198 | Protein | 5e-103 | 42 |
| escV | YP_003366503.1 | T3SS structural protein EscV | VFG1780 | Protein | 4e-100 | 41 |
| escV | YP_003366503.1 | T3SS structural protein EscV | VFG0557 | Protein | 1e-94 | 41 |
