Gene Information

Name : sepQ (ROD_29901)
Accession : YP_003366499.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS structural protein SepQ
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 3163035 - 3163952 bp
Length : 918 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGCCATTGAATTCTCAATCGAATATGAAAATTAATGATTTTTACTTACCATTATTACCTGTCATAGGAATCGGTCG
CCTCTATATTACGTCCGAAGGGCATGCTTGCCATGCATATTTTCGTGAGGTCAGCGGTAATGGTTTTCGTTTCACGTTGG
CATACTCGGGCTATGAGGGGTGTTTTTGGGTATCAGAAGAGCAGCTTATTCAGTGGTGCCATGAGTTATTCCCGTATAGC
GATAGTAGATTGATTCCCGAAGATACGATAAAACTCATGCTCCTATGGGCAATACACGCAACATTACCAGAAGATGATGC
GTCAGTTGATGATGTTCAATTTACGACGTTAAATAAAGATATTTATCCGGTAATAGAAAATAATAATGGTAAAAACAGAC
TTAATGTAATTATTCTTGAAACGACGGTACAAAGTTTACAATATCTGATTAATGATAATTGGCAATTAGTTCCGCATTCT
AATACTCTTTTTTTTGATGGTTATATCGCACCTGGATGGACTGATTATCCAATTACAAAATTGAGTATTGGTGATAGTTT
AAGACTCTATCATGTTGATGATAGTCAAGAGAGAAAATGTTGGCTTGTTATTAATAACCCTTTGGCAACCGTAAAGTTAA
GTGATAATAATTTGTCTGTTACGGATGTTCAGGCCGCGGATCCGTTATGTATTATCAGCAACGAGACTGTAATGAATCGT
ATTTATTGTGCGATTGGTACAATAAATGTCGATATACATAAATTGCGGAATTTAAAAAAAGATGATACTATAGGTTCTGT
CGGATATCATCTTTTCGGTGGGGGGCGGTTAATACGGAATAATACAATAATAGCATATGGAACTATTATAAAAATCAATG
AGGATTTTTATTTTAATATTAGCGTAGTATGTGATTAA

Protein sequence : 
MKPLNSQSNMKINDFYLPLLPVIGIGRLYITSEGHACHAYFREVSGNGFRFTLAYSGYEGCFWVSEEQLIQWCHELFPYS
DSRLIPEDTIKLMLLWAIHATLPEDDASVDDVQFTTLNKDIYPVIENNNGKNRLNVIILETTVQSLQYLINDNWQLVPHS
NTLFFDGYIAPGWTDYPITKLSIGDSLRLYHVDDSQERKCWLVINNPLATVKLSDNNLSVTDVQAADPLCIISNETVMNR
IYCAIGTINVDIHKLRNLKKDDTIGSVGYHLFGGGRLIRNNTIIAYGTIIKINEDFYFNISVVCD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06372.1 SepQ Virulence LEE Protein 3e-139 99
sepQ YP_003236085.1 T3SS structure protein SepQ Virulence LEE Protein 4e-126 86
sepQ AAC38386.1 SepQ Virulence LEE Protein 6e-124 83
ECs4565 NP_312592.1 SepQ Virulence LEE Protein 6e-123 83
sepQ AAC31510.1 L0031 Virulence LEE Protein 5e-123 83
sepQ ACU09455.1 SepQ protein Virulence LEE Protein 5e-123 83
sepQ NP_290265.1 hypothetical protein Virulence LEE Protein 6e-123 83
sepQ CAI43871.1 SepQ protein Virulence LEE Protein 3e-120 82
sepQ YP_003223472.1 T3SS structure protein SepQ Virulence LEE Protein 4e-120 82
sepQ AAK26718.1 SepQ Virulence LEE Protein 2e-119 81
sepQ AAL57545.1 SepQ Virulence LEE Protein 2e-119 81
sepQ CAC81865.1 SepQ protein Not tested LEE II Protein 4e-120 81
sepQ YP_003232156.1 T3SS structure protein SepQ Virulence LEE Protein 5e-120 81

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sepQ YP_003366499.1 T3SS structural protein SepQ VFG0809 Protein 3e-123 83
sepQ YP_003366499.1 T3SS structural protein SepQ VFG0733 Protein 4e-124 83