Gene Information

Name : espH (ROD_29891)
Accession : YP_003366498.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS effector protein EspH
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3162490 - 3163029 bp
Length : 540 bp
Strand : -
Note : -

DNA sequence : 
ATGGATTATATAGGGAGATGTATCATGTCGTCATCATTGTCAGGTATAACTTTTACTACTTTTTTGACAAACAATCATGC
ATCATGGAACAGGTTGACCAGAAATCTTTATATATCGAATACTGATATAGTTGATGAAGTTCAACTTAAAGCACGTACTC
AACAGCGTCACCATCGGATTTTTCCAGAGATTGATGACTGTTCAATTATCCATTTTCGTGGAAAAGAGTATTTTGTTCGC
TTCATTAAAGATGATAAAAGTAATGATTATATATACAAAGTACAAAAGATGACTCAGGAAAGTGGATGTTTCTCAAAGAT
ATTTGGCTTTTTGTATGGCGGTGTTACGAAGGCCCTGGAGTGTAAATTAAATGAGAGACATATTACTCCACTTTCTTCAA
CCTGGTATCCTCGCTCTTCATTAGAAGGCTTCTTAACTGAAAGAGGGCTTTCCTCTTTGTTACGTCGCGTACAATCTACG
GAAAATGTCCCCCTTTCTGAGTCAGCCACATTAAACCCTTTGTCAGGCATGATGGTTTAA

Protein sequence : 
MDYIGRCIMSSSLSGITFTTFLTNNHASWNRLTRNLYISNTDIVDEVQLKARTQQRHHRIFPEIDDCSIIHFRGKEYFVR
FIKDDKSNDYIYKVQKMTQESGCFSKIFGFLYGGVTKALECKLNERHITPLSSTWYPRSSLEGFLTERGLSSLLRRVQST
ENVPLSESATLNPLSGMMV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06373.1 unknown Not tested LEE Protein 7e-82 99
unnamed AAC38387.1 Orf18 Not tested LEE Protein 8e-64 78
espH YP_003236084.1 T3SS secreted effector EspH Virulence LEE Protein 1e-61 76
unnamed ACU09454.1 hypothetical protein Not tested LEE Protein 4e-52 70
Z5115 NP_290264.1 hypothetical protein Not tested LEE Protein 6e-52 70
ECs4564 NP_312591.1 hypothetical protein Not tested LEE Protein 6e-52 70
unnamed AAC31509.1 L0030 Not tested LEE Protein 4e-52 70
unnamed AAK26719.1 unknown Not tested LEE Protein 5e-54 68
unnamed AAL57546.1 unknown Not tested LEE Protein 5e-54 68
st28 CAC81866.1 ST28 protein Not tested LEE II Protein 5e-54 68
espH YP_003232157.1 T3SS effector EspH Virulence LEE Protein 7e-54 68
unnamed CAI43870.1 hypothetical protein Not tested LEE Protein 2e-52 67
espH YP_003223471.1 T3SS effector EspH Virulence LEE Protein 3e-52 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
espH YP_003366498.1 T3SS effector protein EspH VFG0734 Protein 3e-64 78
espH YP_003366498.1 T3SS effector protein EspH VFG0808 Protein 2e-52 70