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Name : tir (ROD_29851) Accession : YP_003366495.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : Tir, translocated intimin receptor Function : - COG functional category : - COG ID : - EC number : - Position : 3159159 - 3160802 bp Length : 1644 bp Strand : - Note : - DNA sequence : ATGCCTATTGGTAATCTTGGTAATAATAATATAAGTAACAATTTAATTCCGCCTGCGCCGCCACTACCGTCACAAACAGA CGGCGCGACAAGGGGGAATGGTAGTAGTCTTATTAGCTCTACAGGATCATTGGGATCTCGTTTATTATTTTCTCCCCTGA GAAGTTCTATCGTTGATACTGTTGATTCCAGAGATGTTCCAGGGCTTCCTGAACATCCATTGCGTTTTGCGACATCAGAG ACATGTTTGCATGGGGGATTTGAGGTTCTTCATGATAAGGGACCACTTGATACTCTAAATCAGAAAATTGGATCCTCTGT ATTTCGTGTTGAACAGCAGCCAGATGGTACCCATGCTGCTATTGGGGTAAAAGATGGTGTAGAGGTTAGCGTTACATTAA ATTCTAGTGAATTGCAAAGCTTGCAATCTCTTGACACTGAAGGTAACGGTCGATTTGTTTTCACCGGGGGACGTGGTGGT AGTGGGCATGCCATGGTCACTGTTGCATCAGATATCTCGCAAGCTCGTGAGAAAATAATAGCTAAGTTAGATCCAGACAA CCATGGAGGAAGACAACCTAAGGACATTGATACACGTTCTGTTGGTGTCGGAAGTGCTTCAGGAATGGGAGATGGAGTTG TTAGCGAAACTCATACTTCAACAACAACTTCAAGTGTTCGTTCAGATCCTAAATTCTGGGTTTCTGTTGGCGCAATTGCT GCTGGTTTAGCGGGGCTGGCAGCTACAGGTATTGTTCAGGCGGTTGCTTTGACACCAGCTCCGGATGATCCTACAACCAC AGATCCTGATGAAGCCGCAAATGCTGCAGAAGCTGCGACAAAAGATCAGTTAACGAAGGAGGCGTTCCAGAATCCTGATA ATCAGAAAGTTAACATTGATGAGCTCGGAAATGCAATTCCGTCGGGTGAGTTAAAAGATGATGTTGTTGCGCAAATAGCA GATCAGGCTAAAGTGGCGGGTGAACAGGCCAGACAGCAAGCTGTTGAAAGCAATGCACAGGCGCAGCAGCGGCATGATGA TCAGCAGGCTAAACGTCAGCAGGAATTGGATCTCTCATCAGGTATTGGTTACGGCCTCAGTAGTGCATTGATTGTTGGTG GGGGGATTGGTGCTGGTGTTACGGCTATGCTCCATAGACGAAATCCGCCGACAGAACAGACAATAGCTACTACACATTCG GTTATTCAGCAGCAGACCGGGGGAAATACTCGAGCACAAGGCGGCGCTGACACCACTGGAGTGGAAAACGCTTCTCTGAC TAGACGTGATTCGCAGGCTAGTGTTGCATCGACCCAATGGTCAGATACCTCTGGCGATGTGGTGAATCCGTATGCTGAAG GTTGGATGTCCAGGAATAATCCATCGCTTCTCGCTCCAGAAGAGCCTATTTATGATGAAGTCGCTCCGGATCCTAACTAT AGCGTTATTCAGCATTTTTCAGGGAATAATCCTGTGACTGGGCGGTTAGTAGGATCTCCTGGGCAGGGTATCCAAAGCAC TTATGCGCTTCTCGCAAGCAGCGGTGGATTGCGATTAGGTATGGGAGGATTGACTGGGGGAGGTGAGAGCGCAGGGAGCG CTGCGAATGCCGCTACAACACCGGGAGTTGAACGTTTCGTCTAA Protein sequence : MPIGNLGNNNISNNLIPPAPPLPSQTDGATRGNGSSLISSTGSLGSRLLFSPLRSSIVDTVDSRDVPGLPEHPLRFATSE TCLHGGFEVLHDKGPLDTLNQKIGSSVFRVEQQPDGTHAAIGVKDGVEVSVTLNSSELQSLQSLDTEGNGRFVFTGGRGG SGHAMVTVASDISQAREKIIAKLDPDNHGGRQPKDIDTRSVGVGSASGMGDGVVSETHTSTTTSSVRSDPKFWVSVGAIA AGLAGLAATGIVQAVALTPAPDDPTTTDPDEAANAAEAATKDQLTKEAFQNPDNQKVNIDELGNAIPSGELKDDVVAQIA DQAKVAGEQARQQAVESNAQAQQRHDDQQAKRQQELDLSSGIGYGLSSALIVGGGIGAGVTAMLHRRNPPTEQTIATTHS VIQQQTGGNTRAQGGADTTGVENASLTRRDSQASVASTQWSDTSGDVVNPYAEGWMSRNNPSLLAPEEPIYDEVAPDPNY SVIQHFSGNNPVTGRLVGSPGQGIQSTYALLASSGGLRLGMGGLTGGGESAGSAANAATTPGVERFV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL06376.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 4e-158 | 100 |
| tir | AAC38390.1 | Tir | Virulence | LEE | Protein | 6e-112 | 79 |
| tir | YP_003236081.1 | putative translocated intimin receptor Tir | Not tested | LEE | Protein | 6e-104 | 76 |
| tir | AAY25394.1 | translocated intimin receptor | Virulence | LEE | Protein | 1e-103 | 76 |
| tir | AAY25393.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-104 | 76 |
| tir | AAY25395.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-104 | 76 |
| espE | CAC81869.1 | EspE protein | Virulence | LEE II | Protein | 3e-98 | 68 |
| tir | YP_003232160.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 4e-98 | 68 |
| tir | AAK26722.1 | Tir | Virulence | LEE | Protein | 2e-98 | 68 |
| tir | AAL57549.1 | Tir | Virulence | LEE | Protein | 2e-98 | 68 |
| tir | CAI43867.1 | translocated intimin receptor | Not tested | LEE | Protein | 5e-96 | 67 |
| tir | YP_003223468.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 7e-96 | 67 |
| tir | ACU09451.1 | translocated intimin receptor protein Tir | Virulence | LEE | Protein | 2e-70 | 57 |
| ECs4561 | NP_312588.1 | hypothetical protein | Virulence | LEE | Protein | 3e-70 | 57 |
| tir | AAY25390.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-70 | 57 |
| tir | AAY25391.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-70 | 57 |
| tir | AAC31506.1 | L0027 | Virulence | LEE | Protein | 2e-70 | 57 |
| tir | AAY25392.1 | translocated intimin receptor | Virulence | LEE | Protein | 2e-70 | 57 |
| tir | NP_290261.1 | translocated intimin receptor protein | Not tested | LEE | Protein | 3e-70 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tir | YP_003366495.1 | Tir, translocated intimin receptor | VFG0737 | Protein | 3e-112 | 79 |
| tir | YP_003366495.1 | Tir, translocated intimin receptor | VFG0805 | Protein | 1e-70 | 57 |
