Gene Information

Name : espD (ROD_29751)
Accession : YP_003366489.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS translocator protein EspD
Function : -
COG functional category : S : Function unknown
COG ID : COG5613
EC number : -
Position : 3149926 - 3151068 bp
Length : 1143 bp
Strand : -
Note : -

DNA sequence : 
ATGCTAAATGTAAATAGCAATATCCAGTCTATAAGGTCTGGGGCCAGTGCTGCTACGGCTATTTCAGGTATTAATCAGCC
TGAAGTGACTTCCGGGCTGGACTTACAACTTGTTAAATCTTTTGCCCCATCAACAAGTTGGGCAGAAAGTACCGCTTTAC
CAATGCCACCAGCAGGCCACTCATTAGTGACGCCCTCTGTTGCTGAGGATGTCTTGAGCAAACTTTTCGGTGACATTAGC
GGTGATGTTATTAATCGCACTGCTGGGACAGAACCAGAGCGCGGCACACAAAATACAAGCTCTGGCTATCCTTATCTTTC
TCAGGTGAATAACGTTGACCCTCAGGCAATGATGATGATGGTTACCCAGTTATCCCTGAATACCTCAGCACAGAAAGTTG
CGAGTATGAAGGACTCCAACGAGATCTACACGGCTGGGCAAAATCAAGCGCTGGAAAATAAAACTCTGGAGTTTAAAAAA
CAGCTTGAAGAACAACAGAAAGCTGAAGAGAAAGCACAAAAAAGTAAAATTGTTGGTCAGGTCTTTGGGTGGTTGGGTGT
TGCGGTAACTGCTATTGCAGCTTTTTTTAACCCAGCTCTCTGGGCTGTTGTTGCCATTAGCGCAACAGCAATGGCACTGC
AAACTGCTGTTGATGTTATGGGCGATAAGGCTCCGCAGGCGTTAAAAACAGCAGCACAAGCTTTTGGCGGTCTATCTCTT
GCCGCAGGTATTCTGACAGCCGGCCTTGGTGGGGTGTCTTCACTTATGTCTAAAGTTGGCGATGTGGCTGGTAAAGTGGG
TTCAAACATTGTAAAAACAGTCACTAAACTGGCCGACGTATTTGTTGAAAATATTGCCTCGAAAGTTTCGGCTGTGGCAA
ATGGTTTAACTACTTCTACGCGCTCTATTGGTACAACTGTGCTTAATAATGATGCAGCGAATCATAATGTGTTATCACAG
ATTTCTGCTTTTGTTGTGGAAAATTTAACTCGACAAAGTGAACAGTTAAGTCAGAGTGCGAAGGCTGAACTGGATAAAGC
CGCAGACGAACTGCAAAACCAGGCTAGTTATATGCAGAGTGCTTCTCAGCTAATCTCCGACTCTGCGCGAGTGAATAGCC
GTATTGTCAGTGGTCGAGTTTAA

Protein sequence : 
MLNVNSNIQSIRSGASAATAISGINQPEVTSGLDLQLVKSFAPSTSWAESTALPMPPAGHSLVTPSVAEDVLSKLFGDIS
GDVINRTAGTEPERGTQNTSSGYPYLSQVNNVDPQAMMMMVTQLSLNTSAQKVASMKDSNEIYTAGQNQALENKTLEFKK
QLEEQQKAEEKAQKSKIVGQVFGWLGVAVTAIAAFFNPALWAVVAISATAMALQTAVDVMGDKAPQALKTAAQAFGGLSL
AAGILTAGLGGVSSLMSKVGDVAGKVGSNIVKTVTKLADVFVENIASKVSAVANGLTTSTRSIGTTVLNNDAANHNVLSQ
ISAFVVENLTRQSEQLSQSAKAELDKAADELQNQASYMQSASQLISDSARVNSRIVSGRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06382.1 EspD Virulence LEE Protein 9e-142 99
espD YP_003236075.1 translocon EspD Virulence LEE Protein 3e-125 87
espD AAC38395.1 EspD Virulence LEE Protein 2e-120 86
espD CAI43861.1 EspD protein Virulence LEE Protein 3e-125 86
espD AAK26728.1 EspD Virulence LEE Protein 2e-125 86
espD YP_003232166.1 translocator EspD Virulence LEE Protein 3e-125 86
espD AAL57555.1 EspD Virulence LEE Protein 2e-125 86
espD YP_003223462.1 translocon EspD Virulence LEE Protein 7e-126 86
espD CAC81875.1 EspD protein Virulence LEE II Protein 2e-125 86
ECs4555 NP_312582.1 protein EspD Virulence LEE Protein 2e-103 70
espD AAC31500.1 L0021 Virulence LEE Protein 1e-103 70
espD ACU09445.1 secreted protein EspD Virulence LEE Protein 1e-103 70
espD NP_290255.1 hypothetical protein Virulence LEE Protein 2e-103 70
espD AFO66304.1 putative secreted protein EspD Not tested SESS LEE Protein 1e-80 65
espD AFO66388.1 putative secreted protein EspD Virulence SESS LEE Protein 1e-80 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
espD YP_003366489.1 T3SS translocator protein EspD VFG0743 Protein 1e-120 86
espD YP_003366489.1 T3SS translocator protein EspD VFG0799 Protein 7e-104 70