Gene Information

Name : espB (ROD_29741)
Accession : YP_003366488.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : T3SS effector protein EspB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3148940 - 3149905 bp
Length : 966 bp
Strand : -
Note : -

DNA sequence : 
ATGAATACTATCGATTATAACAATGCAGCAATCGCCGTTAATCCAGTTGTGAGTAGCACGACTGACAGCGCCAGTTCAAC
AACTACATTAACCTCGTCAAGCAGTTCATCTTTACTTACTGCTGGCAAAGTGGATATTTCTAAACTTCTGCTAGAGGTTC
AAAAACTGATGCGTGAGATGGTCACCACATTACAAGATTATCTTCAGAGGCAATTGGCGCAAAGCTATAACATCCAACAA
GCTATTTTTCAGAGCCAAAATAAAGCTATTGAGGAGAAAAAGGCCGGTGCGACAGCCGCTCTGATTGGTGGTGCTATCTC
ATCTGTCCTGGGGATTTTAGGCTCTTTTGCTGCCATTAATAGCGCAACGAAAGGGGCGAGCGATGTCGTTCAGAAGGCCA
CTTCTGCTTCTGCGAAGTCTGTCAATACCGCCTCTGAAGTTTCAACTAAAGCACTGGTGAAGGCTTCCGAAAGTATTGCG
GATGCCGCAGATGAGACAGTTGGCACATTGCAGCAAGGGATCGCGGCAGCTACAAAAGCGGCAAATCGTACATCAGGTAT
CGCTGATGATGTTACTACTTCTGCTCAGAAAGCTTCTCAGGTAGCTGAAGAGGCTGCTGACGCTGCTCAGGATTTAACAC
GGAAGGCAAATCTGTTAAGTCGCTTTACTGCTGCTGCCGGACGAATTTCTGGTTCTACAGCATTTGTTGTTGTTACCAGC
CTTGCTGAAGGTACGAAAACATTGCCAACAACGATATCTGAATCTGTCAAGTCCAATCATGATATCAATGAGCAGCGTGC
TAAATCGGTAGAAAATCTCCAGGCGTCGAATTTAGAAACCTACAAACAGGATGTTCGCAGATCGCAGGATGATATCGCCA
GCCGCCTGCGTGATATGACAGCGACTGCTCGTGACCTTAATGACCTTATTAATCGTATGGGGCAATCGGCTCGTTTAGCA
GGGTAA

Protein sequence : 
MNTIDYNNAAIAVNPVVSSTTDSASSTTTLTSSSSSSLLTAGKVDISKLLLEVQKLMREMVTTLQDYLQRQLAQSYNIQQ
AIFQSQNKAIEEKKAGATAALIGGAISSVLGILGSFAAINSATKGASDVVQKATSASAKSVNTASEVSTKALVKASESIA
DAADETVGTLQQGIAAATKAANRTSGIADDVTTSAQKASQVAEEAADAAQDLTRKANLLSRFTAAAGRISGSTAFVVVTS
LAEGTKTLPTTISESVKSNHDINEQRAKSVENLQASNLETYKQDVRRSQDDIASRLRDMTATARDLNDLINRMGQSARLA
G

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06383.1 EspB Virulence LEE Protein 3e-113 100
espB AAC38396.1 EspB Virulence LEE Protein 5e-94 86
espB YP_003236074.1 translocon EspB Virulence LEE Protein 1e-89 84
espB AAL57556.1 EspB Virulence LEE Protein 1e-67 65
espB CAI43860.1 EspB protein Virulence LEE Protein 2e-66 65
espB CAC81876.1 EspB protein Not tested LEE II Protein 2e-67 65
espB YP_003223461.1 translocon EspB Virulence LEE Protein 6e-67 65
espB AAK26729.1 EspB Virulence LEE Protein 1e-67 65
espB YP_003232167.1 translocator EspB Virulence LEE Protein 2e-67 65
espB NP_290254.1 hypothetical protein Virulence LEE Protein 2e-68 64
espB AAC31499.1 L0020 Virulence LEE Protein 5e-68 64
ECs4554 NP_312581.1 protein EspB Virulence LEE Protein 2e-68 64
espB ACU09444.1 secreted protein EspB Virulence LEE Protein 1e-68 64
espB AFO66308.1 putative secreted protein EspB Not tested SESS LEE Protein 7e-52 49
espB AFO66387.1 putative secreted protein EspB Virulence SESS LEE Protein 7e-52 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
espB YP_003366488.1 T3SS effector protein EspB VFG0744 Protein 3e-94 86
espB YP_003366488.1 T3SS effector protein EspB VFG0798 Protein 8e-69 64