Gene Information

Name : r1 (ROD_29691)
Accession : YP_003366483.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3204
EC number : -
Position : 3145621 - 3146439 bp
Length : 819 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAGAAATTCATTGATCGTTTTTTTTATTGCAATACTAATTACATCAACCACATTATTCCTCTTTGAATTTAATTT
TAGTTACAAAAAATCACCACAAGAATATTCGCTTTCATTTATCAAAAGATTACCAAATACGGTGAATCTGTCATCGCTTA
CTTATAGTAAGGAGGATAATTTCCTGTATGCGACCCAGAACAGCCCTGCGCAGCTACTCAAAATAACCAAGAGCGGCGAT
ATCATTGACAGGGTCCCGCTGCCTTTTATCTCTGATGCCGAAACAATTGAATACATAAAAGGAAATATTTTTGCAGCAGT
AGACGAAAAAACTTCTGAACTATTCTTTTTCACAATTACGAAACATATGAATGTCTCCTTTCGAAACAAAATTCAGTTAG
AAAAATTTAATAAGAAAAATAGAGGTTTTGAAGGGCTGGCATGGAAAGCAGACGACCTGATGCTGTTTGCCGCAAAAGAG
CGACGCCCTAATGGCATATTTGCATACCAGCTTTCGTCCGATCTGCTGAGTGCAAAGCAAGTAACTATTCCAGAGGCACT
AAATGATATACGTGTTAACGATATATCCGGCCTAGACTTTAATAATGAAAGCCTGATGATTCTGTCCGATGAGTCGCGTA
AGTTACTTAAGTTTAACCTGATAGAAATGTCTTTTGTTGAAATTATGGACTTAACGAAAGGAAATCATGCTTTAACTAGT
GATTTGCCTCAGCCTGAAGGTATTGTAACTATGTCTGATGGAAGTATTTATATTGTCAGTGAACCTGATATCCTCGCTAA
ATTTATCCCACTCAGGTAA

Protein sequence : 
MKRNSLIVFFIAILITSTTLFLFEFNFSYKKSPQEYSLSFIKRLPNTVNLSSLTYSKEDNFLYATQNSPAQLLKITKSGD
IIDRVPLPFISDAETIEYIKGNIFAAVDEKTSELFFFTITKHMNVSFRNKIQLEKFNKKNRGFEGLAWKADDLMLFAAKE
RRPNGIFAYQLSSDLLSAKQVTIPEALNDIRVNDISGLDFNNESLMILSDESRKLLKFNLIEMSFVEIMDLTKGNHALTS
DLPQPEGIVTMSDGSIYIVSEPDILAKFIPLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06388.1 unknown Not tested LEE Protein 1e-122 100
unnamed AAC31535.1 L0056 Not tested LEE Protein 8e-101 85
unnamed ACU09480.1 hypothetical protein Not tested LEE Protein 8e-101 85
Z5143 NP_290290.1 hypothetical protein Not tested LEE Protein 1e-100 85
ECs4591 NP_312618.1 hypothetical protein Not tested LEE Protein 1e-100 85
rorf1 AAC38362.1 rOrf1 Not tested LEE Protein 2e-105 85
unnamed AAK26694.1 unknown Not tested LEE Protein 1e-104 83
st03 CAC81841.1 ST03 protein Not tested LEE II Protein 1e-104 83
unnamed AAL57521.1 unknown Not tested LEE Protein 1e-104 83
ECO111_3730 YP_003236066.1 hypothetical protein Not tested LEE Protein 3e-103 83
ECO26_5249 YP_003232131.1 hypothetical protein Not tested LEE Protein 1e-104 83
unnamed AAL57582.1 unknown Not tested LEE Protein 1e-104 82
unnamed CAI43896.1 hypothetical protein Not tested LEE Protein 7e-105 82
ECO103_3640 YP_003223497.1 T3SS component Virulence LEE Protein 9e-105 82

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
r1 YP_003366483.1 hypothetical protein VFG0708 Protein 1e-105 85
r1 YP_003366483.1 hypothetical protein VFG0834 Protein 5e-101 85