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Name : fimD (ROD_29151) Accession : YP_003366436.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : fimbrial usher protein FimD Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3083587 - 3086223 bp Length : 2637 bp Strand : + Note : - DNA sequence : ATGTCATATCTGAAATCAGGGCTCGACCGTTTGGGATCCCGGCGTATGCGGCACAACGCGCCATGTCCGGCTGGCGTACT TACGCAGCTCCCCTTTGCCCTTTTGCTTGCCGTACAGGCTTTTTCCACGCAGGCGGAACTCTACTTTAACCCGCGCTTTC TGGCGGACGATCCGGCCGCCGTTGCCGACCTTTCCGGTTTCGAAAAGGGACTGGAGTTGCCGCCGGGAACCTATCGCGTG GATATCTACCTCAATGACGGGTATATGACCACCCGCGATGTCACTTTTAGCGCCGGAGAAAATCACCACGGGCTGACGCC GTGCCTGACGCGCGGCGATCTCGCCGGTATGGGCGTGGATATTGCCGCCGTCAGCGGGATGAACGCCCTGGCGACTGACG CCTGCGTGCCGTTAACGCAGATGATCAAAGAGGCCACCCTCCGTTTAGACGTCAGCCAGCAGCGGCTGTATCTGACTATC CCCCAGGCGTTTATGGGGAATCAGGCGCGCGGCTATATTCCGCCTGAACTGTGGGATGACGGCATTAACGCCGGGCTGCT GAACTACAACTTCACCGGCAACAGCGCGCGCAACGATACCAGCGGCAACAGTCATTACGCCTATCTGAATCTGCAAAGCG GGCTGAATCTGGGCGCCTGGCGTCTGCGTGATAACACCACCTGGAGCTACAGCAGCAGTAGCGGCTCCTCGGGCAATGAA AATAAATGGCAACACGTTAACACCTGGCTGGAGCGGGATATTAAACCCTTACGCTCGCGGCTGACGCTCGGCGACAGCTA CACCAACGGCGATATCTTCGATGGGATTAACTTCCGCGGCGCTCAGCTGGCCACGGACGATAATATGCTGCCGGACAGTC AGAAAGGCTTTGCGCCGGTTATTCACGGCATCGCCCGCGGCACGGCGCAGGTTTCCATCAAACAAAACGGCTATGAGATC TACCACAGCACGGTGCCGCCCGGCCCTTTCGCCATTAACGATCTCTACGCCGCCGGCAACGGCGGCGATCTGCAGGTGAC CATTAAGGAGGCCGACGGCAGCAGCCAGAACTTTAGCGTCCCGTACGCCTCGGTGCCGGTACTGCAACGCGAAGGCCACA CCCGCTATGCGCTTACCGCTGGCGAATACCGCAGCGGCAATGACCGGCAGGAGGAACCCGGCTTCTTCCAGAGCACGTTA CTGCACGGGCTACCGGCTGGCTGGACGCTGTACGGCGGCGCGCAGCTGGCGGATCGCTATCGCGCCTTTAACCTGGGGAT GGGGAAGAACATGGGCGAGTTCGGCGCCCTGTCGCTGGACGTGACGCAGGCCGATGCCACCCTGCCCGATGGCAGCAGCC ATCAGGGTCAGTCGATACGTTTTCTCTATAACAAATCGCTTAACGAACTGGGCACCAACGTGCAGTTGGTCGGCTACCGC TACTCCACGCGCGGTTATTTCAGCTTTTCCGACACCACTTACAAACGCATGAGCGGCTACGACGTGGTCACCCAGGACGG AGTGATTCAGGTGAAGCCGAAATTCACCGACTATTACAACCTCGCCTACAGCAAACGCGGCAAGGTGCAGCTCAGCGTCA CCCAGCAGGTCGGCCGCACCGCCACGCTCTATCTGAGCGGCAGCCATCAGACCTACTGGGGCGCCGACGGCGCTGACGAA CAGCTACAGGCCGGACTGAATACCACCGTCAACGACATTAACTGGACGCTAAGCTACAGCCTGACCAAAAACGCCTGGCA GGGCTCACGCGATCGGATGCTGGCCGTCAACGTCAACATCCCCTTCAGCCACTGGCTGCGCTCCGACACGCAATCCGTCT GGCGGCACGCCAGCGCCAGCTACAGCCTCTCTGACGACCTGAACGGTCGGATGAGCAACCTGGCGGGGCTGTACGGCACC CTGCTGGAAGACAACAACCTCAGCTACAGCATGCAGACCGGCTACGCGGGCGGCGGCGAAGGCAGCAGCGGCAGTACCGG CTATGCGACGCTGAACTACCGCGGCGGCTACGGCAACGCCAACGTCGGCTACAGCCGCAGCGACGGGATTAAGCAGCTCT ATTACGGCATGAGCGGCGGCGTGCTGGCCCACGCCAACGGCGTCACGCTGAGCCAGCCGCTGAATGATACGGTCGTGCTG ATCAAAGCGCCGGGGGCGGAAGGCGTAAAAGTAGAGAATCAGACCGGCGTGCGCACCGACTGGCGCGGTTATGCCGTGCT GCCTTACGCCACCGAATACCGGGAAAACCGCGTGGCGCTCGACACCAACTCCCTCGCGGACAATGTCGATCTGGATGATG CCGTCGCCTCCGTCGTCCCTACCCACGGGGCGATTGTCCGCGCAGAGTTTAAAGCCCGCGTCGGGATAAAACTGCTGATG ACGCTGACCCATAACGGCAGGCCGGTGCCGTTCGGCGCGATGGTCACCAGCGACAGCAACCAGAACGGCAGCATCGTCGC CGATAACGGCCAGGTTTATCTGAGCGGTATGCCGCTGGCGGGAAAAGTGCGGGTGAAATGGGGCGATGGCGTCGGCGCCA GCTGCGTCGCCGAGTACCGCCTGCCCGCGCAGAGCCAGCAGCAGATGCTGAGCCAGCTAACGGCCGTGTGCCGCTAA Protein sequence : MSYLKSGLDRLGSRRMRHNAPCPAGVLTQLPFALLLAVQAFSTQAELYFNPRFLADDPAAVADLSGFEKGLELPPGTYRV DIYLNDGYMTTRDVTFSAGENHHGLTPCLTRGDLAGMGVDIAAVSGMNALATDACVPLTQMIKEATLRLDVSQQRLYLTI PQAFMGNQARGYIPPELWDDGINAGLLNYNFTGNSARNDTSGNSHYAYLNLQSGLNLGAWRLRDNTTWSYSSSSGSSGNE NKWQHVNTWLERDIKPLRSRLTLGDSYTNGDIFDGINFRGAQLATDDNMLPDSQKGFAPVIHGIARGTAQVSIKQNGYEI YHSTVPPGPFAINDLYAAGNGGDLQVTIKEADGSSQNFSVPYASVPVLQREGHTRYALTAGEYRSGNDRQEEPGFFQSTL LHGLPAGWTLYGGAQLADRYRAFNLGMGKNMGEFGALSLDVTQADATLPDGSSHQGQSIRFLYNKSLNELGTNVQLVGYR YSTRGYFSFSDTTYKRMSGYDVVTQDGVIQVKPKFTDYYNLAYSKRGKVQLSVTQQVGRTATLYLSGSHQTYWGADGADE QLQAGLNTTVNDINWTLSYSLTKNAWQGSRDRMLAVNVNIPFSHWLRSDTQSVWRHASASYSLSDDLNGRMSNLAGLYGT LLEDNNLSYSMQTGYAGGGEGSSGSTGYATLNYRGGYGNANVGYSRSDGIKQLYYGMSGGVLAHANGVTLSQPLNDTVVL IKAPGAEGVKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNSLADNVDLDDAVASVVPTHGAIVRAEFKARVGIKLLM TLTHNGRPVPFGAMVTSDSNQNGSIVADNGQVYLSGMPLAGKVRVKWGDGVGASCVAEYRLPAQSQQQMLSQLTAVCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 0.0 | 79 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fimD | YP_003366436.1 | fimbrial usher protein FimD | VFG0876 | Protein | 0.0 | 81 |
| fimD | YP_003366436.1 | fimbrial usher protein FimD | VFG1645 | Protein | 0.0 | 66 |
| fimD | YP_003366436.1 | fimbrial usher protein FimD | VFG0912 | Protein | 0.0 | 66 |
| fimD | YP_003366436.1 | fimbrial usher protein FimD | VFG0446 | Protein | 1e-176 | 47 |
| fimD | YP_003366436.1 | fimbrial usher protein FimD | VFG0454 | Protein | 5e-159 | 44 |
