Gene Information

Name : fimC (ROD_29141)
Accession : YP_003366435.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein FimC
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 3082788 - 3083513 bp
Length : 726 bp
Strand : +
Note : -

DNA sequence : 
GTGAAAACATCAGGGGTAATCATGAAAAAAACACGGGCAATCACCAGCTGCCTGCTGACAGGCGTGCTGATGCTGGCCGC
CAGCGGACTGATCTCGCAGGCAAAAGCGGGCGTGGCGCTGGGCGCAACCCGGGTGATTTACCCGGCTGGACAAAAACAGG
TGCAACTGGCGGTGACAAATAATGATGACAACAGCACTTACCTGATCCAGTCATGGGTGGAAAACGCCGACGGCGTGAAA
GATAACCGCTTTGTGGTGACCCCGCCGCTGTTCGCCATGCAGGGGAAAAAAGAGAACACCTTACGTATTCTCGACGCCAC
CAATAACCAGCTGCCGCAGGACCGGGAAAGCCTGTTCTGGATGAACGTCAAAGCGATCCCGTCGATGGATAAATCAAAGC
TCAGCGAAAATACCCTGCAGCTGGCCATCATCAGCCGCATCAAGCTCTATTACCGTCCGGCCGGGCTGCCAATACCGCCA
GATAGTGCGGCAGAAAAGCTTAAATTCCGCCGCAGCACGGACGCGCTGACGCTAATTAACCCCACGCCGTACTACCTGAC
GGTCACCGAACTCACCGCGGGCAACCGCTCTCTGGAAAATGCGCTGGTCCCTCCGCTGGGCGAAGCCCGGGTGAAATTAC
CGGCCGGCGCGAGCGGCGAGATTACCTATAAGACCATTAACGACTACGGCGCGCTGACTCCGCGTATGAAAGGCGCAATG
GAATAA

Protein sequence : 
MKTSGVIMKKTRAITSCLLTGVLMLAASGLISQAKAGVALGATRVIYPAGQKQVQLAVTNNDDNSTYLIQSWVENADGVK
DNRFVVTPPLFAMQGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSKLSENTLQLAIISRIKLYYRPAGLPIPP
DSAAEKLKFRRSTDALTLINPTPYYLTVTELTAGNRSLENALVPPLGEARVKLPAGASGEITYKTINDYGALTPRMKGAM
E

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-78 80
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 6e-73 72

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimC YP_003366435.1 fimbrial chaperone protein FimC VFG0875 Protein 4e-93 80
fimC YP_003366435.1 fimbrial chaperone protein FimC VFG0911 Protein 2e-73 73
fimC YP_003366435.1 fimbrial chaperone protein FimC VFG1644 Protein 4e-73 72
fimC YP_003366435.1 fimbrial chaperone protein FimC VFG0445 Protein 2e-55 50
fimC YP_003366435.1 fimbrial chaperone protein FimC VFG0455 Protein 1e-41 41