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Name : cts1C (ROD_27821) Accession : YP_003366311.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : T6SS protein Cts1C Function : - COG functional category : S : Function unknown COG ID : COG3519 EC number : - Position : 2937987 - 2939867 bp Length : 1881 bp Strand : + Note : similar to SciC; SciC homologue, Duf879 component of T6SS DNA sequence : GTGGAACACAACTTTCTAGATTATTATAACCAGGAACTGACGTTTGTCAGAGAAATGGCGCGAGAATTTGCTGAGCAGCA CCCGAAGATTGCCGGGCGACTAGGGATGCAGGGGATAGAAACTGCCGATCCTTACGTAGAGCGTTTGATCGAGGCATTTT GCTTTTTATCTGCCCGAACGCAGATAAAACTCGATGCAGAATTTCCTAAATTCACCCAACGATTGCTGGATATTATCTAC CCGAATTACAATGCGCCGACGCCGTCAATGGGGGTTGTTCAACTACAGCCGAATCTGAAAGAAGGCGATTTAACGCACGG CTACGTCATCCCCAAAAAAAGCACTTTTTACAGTCGGTTACTGCCAGGCGAAATGACGCGTTGCGAATTCAGGAATAATC AGGACGTCAGGCTGTGGCCGCTGGATATTGCAGAGGTGCGTTTAACCTCTGTCCCTCCGGATATTCCAGACCTGGAACTC CATCGCCTTAACCACCAGCAGTTAAAAGGCGCGCTGCGCATCAAGCTGCGTTTACAGGGTGATTTAGTATTCTCAGATTT GAACGGACTGGATGAGCTACCCATTTATATTCAGGGTGATGAACGCGTAGTATCGCATACCTTTGAATTGCTTCACGGCA GGCATGTCGCGGTGGTGGTTCGTAGCGGAGAGGGTGAAAATATTCACCATCACGTTATTGTCAACGACGCGTTAAAATTT GAAGGGCTGGCGCCAGATCAGAGCCTGTTGCCCTTGCAATGGAATATGTTCCACGGGCACACCCTGATACAGGAATATAT CGCCTGCCGCGAGCGATTTTATTTTTTCTCGATCGCCCAGCTGGCAGCCGCGCTGGAAGAGAATAATACCAATGCAGTAG AAATTATTATTCTGTTAAACAAATTACCGCAGGATCTGGTGCCGCATCTGGACGCCTCGCGATTTTTACTGCACTGCACT GCGGTGATTAACCTCTTTCCCAAACGCGTGGACCGAATTGAAGTTAACCGCGCGCTGAATAATTTTCATATCGTGCCGGA CCGCAGCCGCCCCATGGACTATGAAGTCTTTTCCGTCGATAAAGTCTTCGGCTTACAGGCGGAAACCAGCGAAGAGCTAA CCTTTAATCCGCTCTACCAGACCCGACACAGCGACACCGGTAATTTTGGCCGTTATTTCTCCATCAGACGGGAAGTCAGG GTGAAAGAGGCGAGCCACCGTAAATATGACACCCGCACGCCTTACAGCGGCACGGAGATTTTTATTTCGCTGGTTGATCA ACAGGAAGCGCCCTATAGCGAACATATTCGTTACCTGCTGGTTGACGCTATGGTAACCAACCGCGACCTGCCCCGCTTGC TGACCAGTACCGGCAACCTTGAGTTGACCATGTCAGACTCCGTTCCGATTCACGGCGCCCGCTTCGTCAGCTCGCCAAGC GCCCCGCGTTCGCCATTCGCCGTTGGCGAGGCGGCATGGCGGCTTATCCGTCAGCTTAGCTTTAACTATCTGCCTCTCTC CGGGATGGAACACGCCCGGGGCGGCGAATCGCTGCGTAATATGCTGCGCCTGTTCACCAGCTCTGCCGATACGGAAACCC TGACGCAAATTAACAGCCTAGTGGGGTGTAAAACCGAGCCCGTGGTGCGTCGCCTGTCAGAGGAGGGACTGCTGGTTTAC GGGCGCGGCGTGCGTTGTAGTTTAACCGTCGATGAAGAGGGTTTCTCCGGCATCAGTCCGTATCTTTTTGGCCTGGTGAT GGAAAATTACCTGGCGCGGCACGCGGCGATCAACATCTTTACCGAAACTGAACTGCACTCCATGCAGCGCGGCTTAATCG CACGCTGGAACGCGCGTCCCGGCAGACGAGGCGCATTATGA Protein sequence : MEHNFLDYYNQELTFVREMAREFAEQHPKIAGRLGMQGIETADPYVERLIEAFCFLSARTQIKLDAEFPKFTQRLLDIIY PNYNAPTPSMGVVQLQPNLKEGDLTHGYVIPKKSTFYSRLLPGEMTRCEFRNNQDVRLWPLDIAEVRLTSVPPDIPDLEL HRLNHQQLKGALRIKLRLQGDLVFSDLNGLDELPIYIQGDERVVSHTFELLHGRHVAVVVRSGEGENIHHHVIVNDALKF EGLAPDQSLLPLQWNMFHGHTLIQEYIACRERFYFFSIAQLAAALEENNTNAVEIIILLNKLPQDLVPHLDASRFLLHCT AVINLFPKRVDRIEVNRALNNFHIVPDRSRPMDYEVFSVDKVFGLQAETSEELTFNPLYQTRHSDTGNFGRYFSIRREVR VKEASHRKYDTRTPYSGTEIFISLVDQQEAPYSEHIRYLLVDAMVTNRDLPRLLTSTGNLELTMSDSVPIHGARFVSSPS APRSPFAVGEAAWRLIRQLSFNYLPLSGMEHARGGESLRNMLRLFTSSADTETLTQINSLVGCKTEPVVRRLSEEGLLVY GRGVRCSLTVDEEGFSGISPYLFGLVMENYLARHAAINIFTETELHSMQRGLIARWNARPGRRGAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0289 | NP_454871.1 | hypothetical protein | Not tested | SPI-6 | Protein | 1e-177 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| cts1C | YP_003366311.1 | T6SS protein Cts1C | VFG2074 | Protein | 7e-118 | 42 |
