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Name : cts1V (ROD_27811) Accession : YP_003366310.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : T6SS protein Cts1V Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2934994 - 2937696 bp Length : 2703 bp Strand : - Note : SciG homologue, ClpV ATPase component of T6SS DNA sequence : ATGAGTCTTGTTGTGGCGATTACCAGAAAAAATCTATTCGGAAAACTTAATATAAGCCTGTTTAAAAGCGTGGAGAGTGC CACTACGCTGTGTAAATTACGCGGTAATCCTTACGTTGAATTGGTTCACTGGTTAAATCAGATTTATCAGCAGCAGGATA GCGATATCCGCCATATTGTACGGCATTTTGAACTTGATGCAGAAATTCTCGAACGTGATTTTGCTCAGGCATTAACGCGC CTGCCGGCGGGCGCCAGTTCTATTTCCGATTTTTCATATCATATTGAACTGGCTATCGAGCGGGCATGGATATTTGCCAG CCTGGAGTGTCAGAACACGAGTATTCGTAGCGGTCATTTGTTGATGGCGCTGCTGACCACCATGGAATTACGTCGCGCGC TATTCAGCATTTCGTCTGTATTCGAAAAAATTCCGCTGGAACAGTTAAGCAAAGATCTTGGCTACATTATTCGCGACTCT GCGGAAGAGAGCGAAGCGGGCGGCGCAATGGTTTCCGCCGAAGCGGGCGTACCGGGCGAAGCCAGTAACGCGATGGGGGG CACGCAGAGCGGCGGACTGGCGCAATATTCAACCGATCTGACCGCGCTGGCGCGTGAAGGCAAAATTGATCCGGTGCTGG GGCGGGATAAAGAGATCAATACCATGATCGATATTCTGTTGCGTCGTCGACAGAATAACCCGCTGCTCACCGGGGAAGCG GGGGTCGGGAAAACGGCGGTCGTGGAAGGTCTGGCGCTGGCGTTAGCTGCCGGAGAAGTACCGCCCGCGCTGCAAAAAGT TCGCCTGCTGACGCTGGATGTCACCGCGCTTTCCGCCGGAGCCAGCATGAAAGGTGAATTTGAAGCGCGTTTAAAAGCGG TGCTGGAAGACGCCGCCAAATCAGTCGATCCGGTGATTTTGTTTATTGATGAGGTGCATACGCTGGTCGGCGCGGGCGGC AATGCCGGCACCGGGGATGCCGCTAATCTGATGAAACCGATGCTGGCTCGCGGGCAGCTGCGCACCATCGGTGCGACAAC CTGGAGCGAATTTAAGCGCCACATCGAAAAAGATCCGGCGCTGACGCGACGTTTCCAGGTGCTGCAGGTCGAGGAGCCGT CGGAAGATCTGGCTATCGCTATGCTGCGCGGCCTGCTGCCGGTACTGGAAAAACACCACGGCGTCTGGGTCATGGATGAG GCGATCCGCGCCGCCGTCCGTTTATCTCATCGCTATATTCCGGCCCGGCAGTTGCCCGATAAAGCGATCAGCCTGCTGGA TACGGCCTGCGCCAGGGTCGCCGTCGCGCAGCACGCGCCGCCAACCGAGCTACAGCTGCTGAAATTCCATCAGCAGTCGG CGCAGGCTGAACTGTCCATGCTGGAAAAAGCGATTGGCTTTGGCAAAGAGGACGATAAACGCCTTCAGCCGATTCAGCGC GCTATCGACGACCATGCAGAAGAAGCGACGGCGCTGGAGCGGCGCTGGGCGCAGGAGTGCGAACTGGTGGCGACGATTAT TGATACCCGCCAGCAGTTGCTTGCCGCCACGGTGGACGATCCGCAAACGCCGGAAGCGGAAAAAATCAGTTACCTGCAGT CTCGTTTGAATGAGCTGGAAGCGACGCTGAGCGAGATCCGCGGCGAAAAGGCGCTGGTGCAGACGGAAGTGAACGCCAGC ATCGTGGCGGCGATCGTGGCGGACTGGACGGGTATCCCGGTGGGTCAGGTGCTGAAAGACGACGTCAGCGCCGTCATGGA ACTACCGCAACGTCTGGCGGAAAAAGTCATTGGCCAGACGTATGCGTTAACCTGCCTGAGCCAGAGTATTCAGACCGCGC GCGCCGGGCTTGCCGATCCGCAAAAACCTTTTGGCGTGTTCATGCTGGTTGGCCCTTCCGGGGTCGGGAAAACCGAAACC GCGCTGGCGATTGCCGACCAGCTTTATGGCGGCAAGCAGAATCTGATCACTATTAATATGAGTGAATATCAGGAAGCGCA TACGGTTTCTTCGCTGAAAGGATCGCCGCCGGGTTATGTGGGATATGGCGAAGGCGGCGTATTAACCGAAGCGGTACGCC GCAAGCCTTATAGCGTCATTTTACTGGATGAAGTGGAAAAAGCGCACACCGATGTGCATGAACTGTTTTTCCAGGTATTT GATAAAGGTTCGATGGAAGACGGTGAAGGGCGGCAGATCGATTTTCGCAATACCGTCATTTTGCTGACCAGTAACGCCGG TAGCGACATTATTAGCAGCGCCTGCGCCGATCCGCAAACCATGCCTGATGAAGAAGGCTTGCTGAAATTACTACAGCCAG CATTGCTGAAGATATTTCCGGCCGCGTTTTTAGGTCGCGTCACCGTTATACCTTATTTACCGTTGGCGACGGATTCGCTG CAGCATATTGTCAGAATTCATTTGAACCGTATCGCTGAGCGTGCGAAAGCGCAGTATGAGATGACGCTTAACTTCAGCGA TGAATTGGTCCAGCACGTTGTTGAACAGTGTCCGGTAGCGGAAACCGGCGCCAGGATGCTAATCCGCTTTATTGAGAAAA ATATTTTACCAAAGATAGGCAGTGCACTTTTAACCCAGGCTGACAAACCGGCAAAAAATAAAACAATAACCATGCAGTGC ATTTTATCTGAAGAAAAGGAAATTGATATTGAGATGCAACTGGAGGGAAAACAAAACATTTAA Protein sequence : MSLVVAITRKNLFGKLNISLFKSVESATTLCKLRGNPYVELVHWLNQIYQQQDSDIRHIVRHFELDAEILERDFAQALTR LPAGASSISDFSYHIELAIERAWIFASLECQNTSIRSGHLLMALLTTMELRRALFSISSVFEKIPLEQLSKDLGYIIRDS AEESEAGGAMVSAEAGVPGEASNAMGGTQSGGLAQYSTDLTALAREGKIDPVLGRDKEINTMIDILLRRRQNNPLLTGEA GVGKTAVVEGLALALAAGEVPPALQKVRLLTLDVTALSAGASMKGEFEARLKAVLEDAAKSVDPVILFIDEVHTLVGAGG NAGTGDAANLMKPMLARGQLRTIGATTWSEFKRHIEKDPALTRRFQVLQVEEPSEDLAIAMLRGLLPVLEKHHGVWVMDE AIRAAVRLSHRYIPARQLPDKAISLLDTACARVAVAQHAPPTELQLLKFHQQSAQAELSMLEKAIGFGKEDDKRLQPIQR AIDDHAEEATALERRWAQECELVATIIDTRQQLLAATVDDPQTPEAEKISYLQSRLNELEATLSEIRGEKALVQTEVNAS IVAAIVADWTGIPVGQVLKDDVSAVMELPQRLAEKVIGQTYALTCLSQSIQTARAGLADPQKPFGVFMLVGPSGVGKTET ALAIADQLYGGKQNLITINMSEYQEAHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVILLDEVEKAHTDVHELFFQVF DKGSMEDGEGRQIDFRNTVILLTSNAGSDIISSACADPQTMPDEEGLLKLLQPALLKIFPAAFLGRVTVIPYLPLATDSL QHIVRIHLNRIAERAKAQYEMTLNFSDELVQHVVEQCPVAETGARMLIRFIEKNILPKIGSALLTQADKPAKNKTITMQC ILSEEKEIDIEMQLEGKQNI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 0.0 | 60 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 9e-126 | 42 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 1e-125 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| cts1V | YP_003366310.1 | T6SS protein Cts1V | VFG2076 | Protein | 0.0 | 54 |
| cts1V | YP_003366310.1 | T6SS protein Cts1V | VFG2084 | Protein | 6e-143 | 44 |
