|
Name : cts1B (ROD_27751) Accession : YP_003366304.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : T6SS protein Cts1B Function : - COG functional category : S : Function unknown COG ID : COG3517 EC number : - Position : 2928226 - 2929725 bp Length : 1500 bp Strand : - Note : SciI homologue, Duf877 component of T6SS DNA sequence : ATGGCAACTCAAGCACAAAACCATAAGCAGGCCGCGCCGCAGGCCACCACGCAAAATGATTTTAATGCGTTACTGACCCG TGAATTTAAGCCGAAATCCGAGCAGGCGAAATCGGCGGTCGAAATGGCGGTGAAAACCCTGGCGGAACAGGCGCTCTCTA CCTCGATCACTATGGCTGACGATGCTTATAAAAACATCGCGGCGATTATCGCGGAGATTGACCTTAAGCTGTCAGAGCAA ATTAACCTGATTCTTCATCATGAAGAGTTCCAGCGTCTGGAAAGCGCCTGGCGCGGCCTGCACTACCTGGTGAACAACAC CGAAACCGATGAGAAGCTGAAGCTGCGCTTTATGGACATTTCCAAGGATGACCTGCGTCGCAACATGAAGCGCTACAAAG GGATCGCATGGGATCAAAGCCCGCTATTTAAGCAGATTTACGAAGAAGAGTACGGTCAGCTTGGCGGCGAACCTTACGGC TGCCTGGTGGCGGATTACCATTTCGATCACAGCGCGCCGGATGTGGATCTGCTCTCCTCGATTGGCAAGGTGGCGGCGTC CGCCCATATGCCGTTTATTACCGGCGCGTCGCCATCCGTTATGCAGATGGACTCCTGGCAGGAGCTGGCTAACCCGCGTG ATCTGACGAAAATCTTTACCCAGAACCTGGAATATGCCGCGTGGAACTCCCTGCGTCAGTCTGAGGACTCTCGTTATATC GGTCTGGCGATGCCGCGCTTCCTTGCGCGTCTGCCTTACGGCATCAACACTAACCCGGTAGATAACTTTAATTTTGAAGA AGATACCGACGGCGCGAATCACAGCAAATACGTCTGGGCTAACGCTGCGTATGCGATGGCGGTCAACATCAACCGTTCCT TCAAGCATTACGGCTGGTGCACCATGATTCGCGGCGTAGAGAGCGGCGGCGTGGTGGAAGATCTGCCTTGTCATACCTTC CCGACCGACGATGGCGGCGTGGATATGAAATGCCCGACGGAAATCGCAATTTCCGATCGTCGCGAGGCGGAGCTGGCGAA GAATGGCTTTATTCCCCTGGTTCACCGTAAAAATACCGATTACGCGGCGTTTATTGGCGCGCAGTCATTGCAGAAACCAG CGGAATATTACGATCCGGACGCCACGGCCAACGCCAATCTTTCCGCGCGTCTTCCGTACCTGTTTGCCTGTTCACGTTTC GCACATTATCTGAAGTGCATCGTGCGCGACAAAATCGGTTCGTTCAAAGAGCGTGAAGATATGCAGCGCTGGCTGAACAA TTGGGTCATGAATTATGTCGATGGCGACCCGGCGAACTCATCGCAGGAAACCAAAGCGCGCCGTCCGCTGGCGGCGGCGG AAGTGGTGGTGGAAGACGTGGAAGGCAATCCGGGTTATTACCAGGCGAAATTCTTCCTGCGTCCTCATTTCCAACTGGAA GGTCTGACCGTTTCTTTACGCATGGTCGCTAAATTACCGTCGCTGAAAGACGTGGCGTAA Protein sequence : MATQAQNHKQAAPQATTQNDFNALLTREFKPKSEQAKSAVEMAVKTLAEQALSTSITMADDAYKNIAAIIAEIDLKLSEQ INLILHHEEFQRLESAWRGLHYLVNNTETDEKLKLRFMDISKDDLRRNMKRYKGIAWDQSPLFKQIYEEEYGQLGGEPYG CLVADYHFDHSAPDVDLLSSIGKVAASAHMPFITGASPSVMQMDSWQELANPRDLTKIFTQNLEYAAWNSLRQSEDSRYI GLAMPRFLARLPYGINTNPVDNFNFEEDTDGANHSKYVWANAAYAMAVNINRSFKHYGWCTMIRGVESGGVVEDLPCHTF PTDDGGVDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDPDATANANLSARLPYLFACSRF AHYLKCIVRDKIGSFKEREDMQRWLNNWVMNYVDGDPANSSQETKARRPLAAAEVVVEDVEGNPGYYQAKFFLRPHFQLE GLTVSLRMVAKLPSLKDVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec18 | YP_851426.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 8e-84 | 42 |
| aec18 | AAQ96712.1 | Aec18 | Not tested | AGI-1 | Protein | 6e-84 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| cts1B | YP_003366304.1 | T6SS protein Cts1B | VFG2070 | Protein | 0.0 | 72 |
| cts1B | YP_003366304.1 | T6SS protein Cts1B | VFG2475 | Protein | 5e-88 | 41 |
