Gene Information

Name : cts1H (ROD_27741)
Accession : YP_003366303.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : Hcp family T6SS protein Cts1H
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 2927581 - 2928066 bp
Length : 486 bp
Strand : -
Note : Hcp component of T6SS. Similar to SciK/M

DNA sequence :

ATGGCTCAGGATATGTTTATTAAAATTGATGGCATCGAAGGCGAATCTCTTGATGCTTCCCATAAAAATGAAATCGAAGT
GCTGTCCTGGCGTTGGGCCAGCGCGCAGAGTTCAAATATGCACAGCGGTTCCGGCGGCGGCGCAGGTAAAGCAACGGTTG
AAGATTTTTGCTTCGAGCACTATGTCGATAAGGCCAGTACGAATCTTCTGAGCTACTGCCTGTCCGGTAAGCATATTAAA
GACATTCAGTTTGTGGTTCGTAAAGCTGGCGGCGATCCGCTGGAATATCTGACCATTAAATTCTCCGATGTCATTATTAC
CCGCGTTGAAACGGCAGGTTCCAACGAAGACGAAACACGCCCGCGTGAACGCGTGACGTTCGCCTTCACCAAACTGACCC
AGGATTACGTTATGCAGAACGCCGAAGGCGCGAAATCTGGCGTAATTTCTACCAGTTATGACGTAAAAGCTAACCTGCGC
AGCTAA

Protein sequence :

MAQDMFIKIDGIEGESLDASHKNEIEVLSWRWASAQSSNMHSGSGGGAGKATVEDFCFEHYVDKASTNLLSYCLSGKHIK
DIQFVVRKAGGDPLEYLTIKFSDVIITRVETAGSNEDETRPRERVTFAFTKLTQDYVMQNAEGAKSGVISTSYDVKANLR
S

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0302	NP_454882.1	conserved hypothetical protein	Not tested	SPI-6	Protein	1e-42	55

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
cts1H	YP_003366303.1	Hcp family T6SS protein Cts1H	VFG2071	Protein	8e-24	44