|
Name : clpB (ROD_25341) Accession : YP_003366069.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Unknown Product : chaperone (heat-shock protein F84.1) Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2678379 - 2680952 bp Length : 2574 bp Strand : - Note : - DNA sequence : ATGCGTCTGGATCGTCTTACCAACAAATTCCAGCTTGCTCTTGCCGATGCCCAGTCGCTCGCACTGGGGCACGACAACCA GTTTATCGAACCTTTGCACTTAATGAGCGCCTTGCTGAATCAGGAAGGGGGCTCGGTTCGTCCTTTATTAACGTCTGCCG GTATTAACGCAGGCCAGTTACGCACCGCCATCGATCAGGCGCTGAGTCGTTTACCGCAGGTGGAAGGCACCGGCGGCGAC GTACAGCCGTCGCAGGATCTGGTGCGCGTCCTCAACCTTTGCGACAAGCTGGCGCAAAAACGAGGGGACAATTTTATTTC GTCGGAATTGTTCGTTCTGGCGGCGCTTGAGTCCCGCGGCACGCTGGCCGATTTACTGAAATCGGCGGGGGCGACGACCG CCAGTATCTCTCAGGCAATCGAACAAATGCGCGGAGGTGAAAGCGTGAACGACCAGGGGGCTGAAGACCAACGTCAGGCC TTGAAAAAATATACGGTCGATCTGACCGAGCGCGCCGAGCAGGGCAAGCTCGACCCGGTGATTGGCCGTGATGAAGAAAT TCGCCGTACCATTCAGGTACTGCAACGGCGCACCAAAAACAACCCGGTACTGATCGGTGAGCCCGGCGTTGGTAAAACCG CTATTGTGGAAGGGCTGGCGCAGCGGATCATTAATGGCGAAGTGCCGGAAGGCTTAAAAGGCCGTCGCGTGCTGGCGCTG GATATGGGCGCGCTGGTGGCCGGGGCGAAATACCGCGGCGAATTTGAAGAACGCTTAAAAGGCGTACTGAACGATCTCGC GAAACAGGAAGGCAACGTGATCCTGTTTATCGATGAGCTGCACACCATGGTTGGCGCCGGGAAAGCCGATGGCGCAATGG ACGCCGGCAACATGCTGAAGCCAGCGCTGGCGCGTGGCGAACTGCACTGCGTGGGCGCCACTACCCTGGATGAGTACCGT CAGTACATCGAAAAAGATGCGGCGCTGGAGCGTCGTTTCCAGAAGGTCTTTGTTGCCGAACCGTCGGTGGAAGACACCAT CGCGATCCTGCGTGGCCTGAAAGAGCGTTACGAACTGCACCACCACGTGCAGATTACCGACCCGGCGATTGTCGCGGCGG CGACGCTGTCTCATCGCTATATCGCCGATCGCCAGCTGCCGGATAAAGCCATCGACCTGATCGACGAGGCCGCATCCAGC ATTCGTATGCAGATCGACTCGAAGCCGGAAGAACTCGACAGACTCGACCGCCGTATCATCCAGCTCAAGCTGGAGCAGCA GGCGTTAATGAAAGAGTCTGATGAGGCGAGTAAAAAACGTCTCGACATGCTCAACGAAGAACTGAATGACAAAGAGCGTC AGTACTCTGAGTTAGAAGAAGAATGGAAAGCGGAAAAAGCCTCGCTCTCCGGCACGCAGACCATTAAAGCCGAGCTGGAA CAGGCGAAGATCGCGATTGAGCAGGCGCGTCGCGTGGGCGACCTGGCGCGGATGTCAGAACTGCAGTACGGCAAAATCCC CGAACTGGAGAAGCAGCTTGAGGCTGCCACCCAGTCCGAAGGAAAAACGATGCGCCTGCTGCGTAATAAAGTGACCGATG CGGAAATCGCCGAAGTACTGGCGCGCTGGACCGGCATTCCGGTATCGAGAATGCTGGAAGGCGAACGTGAAAAACTGCTG CGGATGGAGCAGGAGTTGCACAGCCGCGTTATCGGACAGAACGAAGCGGTGGAAGCGGTATCGAACGCGATTCGTCGTAG CCGCGCGGGGCTGGCGGATCCCAATCGTCCAATCGGTTCTTTCCTGTTCCTGGGGCCAACCGGGGTAGGGAAAACGGAAC TGTGTAAAGCGCTGGCGAACTTTATGTTCGATAGCGATGACGCGATGGTGCGTATTGATATGTCCGAGTTTATGGAGAAA CACTCCGTGTCTCGTCTGGTCGGCGCGCCTCCGGGATATGTCGGTTATGAAGAGGGCGGTTACCTGACGGAAGCGGTACG GCGTCGTCCTTATTCGGTCATCCTGTTAGATGAAGTGGAAAAAGCGCATCCGGATGTATTCAACATTCTGCTGCAGGTAC TTGATGACGGACGCCTGACTGACGGGCAGGGGAGAACGGTCGATTTCCGCAATACGGTGGTTATTATGACCTCTAACCTA GGCTCCGATCTGATTCAGGAGCGTTTCGGCGAACTGGACTACAGCCATATGAAAGAGATGGTACTGGGCGTAGTAAGCCA CAACTTCCGTCCGGAGTTCATTAACCGTATTGATGAAGTTGTTGTGTTCCATCCGCTGGGTGAACAGCACATCGCCTCGA TTGCGAAGATCCAGCTGCAGCGTCTGTACAAACGTCTGGAAGAGCGCGGTTATGAAATCCACATTTCTGATGAGGCACTG AAACTGCTTAGCGCAAATGGTTACGATCCGGTGTATGGCGCGCGTCCGTTGAAACGCGCTATTCAGCAGCAGATCGAAAA CCCACTGGCACAGCAAATCCTGTCGGGTGAGTTAATTCCAGGCAAAACCATTCGTCTGGAAGCGAATGGTGAAAAGATTG TGGCAGTGCAATAA Protein sequence : MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTAIDQALSRLPQVEGTGGD VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADLLKSAGATTASISQAIEQMRGGESVNDQGAEDQRQA LKKYTVDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELNDKERQYSELEEEWKAEKASLSGTQTIKAELE QAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQSEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLEGEREKLL RMEQELHSRVIGQNEAVEAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GSDLIQERFGELDYSHMKEMVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAKIQLQRLYKRLEERGYEIHISDEAL KLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGELIPGKTIRLEANGEKIVAVQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-102 | 43 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 3e-99 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 3e-99 | 41 |
