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Name : lfiP (ROD_02311) Accession : YP_003363875.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : flagellar export/assembly protein Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 279100 - 279858 bp Length : 759 bp Strand : - Note : - DNA sequence : ATGAAACGGTCGGCTACACTTACGCTGGCGCTGGGCATCGCTCTGTTCGCCCTTTCCCCCTTCGCCTGCGCCCAGGGGGG CGAGATCCCCTTGCTGAACGTGGTCACCCACGGCGCCAGCCAGGAATATAGCGTCAAAATTCAGGTGCTGATCCTGATGA CCCTCGTCGGGCTGCTGCCGACGCTGGTGCTGATGATGACCTGCTTCACCCGCTTCATTATCGTGCTCTCTCTGCTGCGC CAGGCGCTGGGCCTGCAGCAGACGCCGCCGAACCGCATACTGATCGGCATTGCGCTCTGCTTAACGATGCTGGTGATGCG CCCAATCTGGCTCAACATCTACGATCGCGCCGTCGTTCCGTTTGAAAATGACCAGATGACCCTCTCTGACGCCCTGAGCA CCGCCGCCACGCCGCTGAAGCGCTTTATGCTGGCGCAAACCAACAAAAAGGCGATGGCGCAGATTATGACTATCGCCGAC GTGAAAGGCGACGCCGCCGATCAGGATCTGACCATCGTGGTGCCTGCCTATGTGCTCAGCGAACTGAAAACCGCCTTTCA GATCGGCTTTATGATTTACATCCCGTTTCTGGTCATTGATCTGATTGTCGCCAGCGTCCTGATGGCGATGGGGATGATGA TGCTGTCGCCGCTGATCGTCTCACTGCCCTTTAAGCTGATGCTGTTCGTACTTATCGACGGCTGGTCGCTGACCGTCGGC ACGCTGACTTCCAGTATCCGCGGGCTGGGTCTGGGCTGA Protein sequence : MKRSATLTLALGIALFALSPFACAQGGEIPLLNVVTHGASQEYSVKIQVLILMTLVGLLPTLVLMMTCFTRFIIVLSLLR QALGLQQTPPNRILIGIALCLTMLVMRPIWLNIYDRAVVPFENDQMTLSDALSTAATPLKRFMLAQTNKKAMAQIMTIAD VKGDAADQDLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTVG TLTSSIRGLGLG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAT96146.1 | HrcR | Virulence | T-PAI | Protein | 5e-25 | 44 |
| hrcR | AAT96200.1 | HrcR | Virulence | T-PAI | Protein | 4e-25 | 44 |
| hrcR | ABQ88359.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-24 | 43 |
| hrpW | AAB05075.1 | HrpW | Virulence | Hrp PAI | Protein | 2e-24 | 43 |
| hrcR | NP_791222.3 | type III secretion protein HrcR | Virulence | Hrp PAI | Protein | 2e-25 | 42 |
| hrcR | AAG33884.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-25 | 42 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 1e-27 | 42 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 4e-31 | 41 |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 3e-28 | 41 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 3e-28 | 41 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 3e-28 | 41 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 2e-28 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lfiP | YP_003363875.1 | flagellar export/assembly protein | VFG1259 | Protein | 1e-57 | 56 |
| lfiP | YP_003363875.1 | flagellar export/assembly protein | VFG2016 | Protein | 5e-54 | 55 |
| lfiP | YP_003363875.1 | flagellar export/assembly protein | VFG2338 | Protein | 2e-47 | 49 |
| lfiP | YP_003363875.1 | flagellar export/assembly protein | VFG2494 | Protein | 2e-50 | 48 |
