|
Name : ldcC (ROD_01941) Accession : YP_003363838.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : lysine decarboxylase, constitutive Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 229624 - 231762 bp Length : 2139 bp Strand : + Note : - DNA sequence : ATGAATATCATTGCCATTATGGGACCCCATGGCGTCTTTTATAAAGATGAACCCATTAAGGAGCTTGAGCGCGCACTGCA GGCGCAAGGGTTTCAGATTATCTGGCCGCAAAACAGCGTCGATCTGCTGAAGTTTATTGAACACAACCCGCGAATCTGCG GCGTGATTTTTGACTGGGATGAGTACAGTCTCGATCTTTGCAGCGACATTAATCAGCTCAACGAATATTTGCCGCTGTAC GCCTTTATTAATACCCATTCCACGATGGACGTCAGCGTACACGATATGCGCATGGCGCTATGGTTCTTTGAGTATGCGCT GGGGCAGGCGGAAGATATCGCCACGCGCATCCGGCAGTACACTGACGAATACCTCGACAACATTACGCCGCCCTTTACCA AAGCGTTATTCACCTATGTGAAGGAAGGGAAGTATACCTTCTGTACGCCGGGACATATGGCCGGCACCGCATATCAAAAA AGTCCGCCAGGCTGCCTGTTTTATGACTTTTTTGGCGGCAACACGCTGAAAGCCGACGTTTCGATTTCGGTCACCGAACT CGGTTCGTTGCTCGACCATACCGGCCCGCATCTGGAGGCGGAAGAGTACATTGCCCGAACCTTCGGCGCAGAGCAGAGCT ATATGGTGACTAACGGCACCTCTACGTCCAATAAGATTGTCGGGATGTATGCCGCACCGACCGGCAGTACGCTACTGATT GATCGCAACTGCCATAAATCGCTGGCGCATCTGCTGATGATGAGCGATGTCGTCCCCCTGTGGCTGAAACCGACGCGCAA TGCGCTTGGCATCCTCGGCGGCATTCCGCGACGCGAATTCACGCGCGAGAGCATAGAAAATAAGGTCGCCGAAACGCCGC AGGCGCAGTGGCCGGTTCATGCGGTTATCACCAACTCCACCTATGACGGGCTGCTGTATAACACCAACTGGATTAAGCAG ACGCTGGATGTCCCGTCGATCCACTTCGATTCCGCCTGGGTGCCGTACACTCATTTTCATCCCATCTATCAGGGAAAAAG CGGCATGAGCGGCGAGCGGGTGCCGGGTAAAGTGATCTTCGAGACGCAGTCGACCCATAAGATGCTGGCGGCGCTCTCAC AGGCTTCGCTGATTCACATTAAAGGGGAGTATGACGAAGACACCTTTAATGAAGCGTTTATGATGCACACCTCCACCTCG CCGAGCTACCCCATTGTGGCTTCGATAGAAACGGCGGCGGCGATGCTGCGCGGCAATCCCGGAAAACGGTTAATCAACCG CTCGGTGGAGCGTGCGCTGCATTTCCGCAAAGAGGTGCAGCGTCTGCGGGAAGAGTCTGACAGCTGGTTCTTCGATATCT GGCAGCCGGAAGAGGTGGATGCCGCCGAATGCTGGCCTGTCGCGCCGGGGGAGGAGTGGTACGGGTTTAACGACGCCGAC CACGATCATATGTTCCTCGATCCGGTTAAAGTCACCATCCTGACGCCGGGGATGGACGAGCAGGGAAACATGAGCGACGA AGGCATTCCCGCCGCGCTGGTAGCGAAATTCCTCGATGAGCGTGGCGTGGTGGTTGAGAAAACCGGCCCTTATAACCTGC TGTTTTTGTTCAGCATCGGCATTGATAAAACCCGGGCGATGGGGCTGCTGCGCGGCCTGACCGAATTCAAGCGCGCTTAC GATCTCAATCTGCGGGTTAAAAATATGTTGCCGGATCTGTACGCCGAAGATCCCGATTTCTACCGTAACATGCGTATTCA GGATCTGGCCCAGGGGATCCATAAGCTCATCCGCCAGCACGATCTTCCCGGACTCATGCTGCGCGCGTTCGATACGCTGC CGGAGATGATGATGACACCGCATCAGGCCTGGCAGCGGCAGATCAGAGGCGACGTAGAGACCGTGACGCTGGATCAACTG GTCGGGCGCGTCTCCGCCAATATGATCCTGCCGTATCCGCCAGGGGTGCCGCTGCTGATGCCAGGGGAAATGATCACCGA ACAGAGCCGGGCGGTACTCGATTTTCTTCTGATGCTCTGTTCGGTGGGGCATCACTATCCGGGCTTCGAAACCGATATTC ACGGGGCGAAACAGGACGAAGAGGGCGTATACCGCGTACGTGTCTTAAAAAACATATGA Protein sequence : MNIIAIMGPHGVFYKDEPIKELERALQAQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLY AFINTHSTMDVSVHDMRMALWFFEYALGQAEDIATRIRQYTDEYLDNITPPFTKALFTYVKEGKYTFCTPGHMAGTAYQK SPPGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPTGSTLLI DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRESIENKVAETPQAQWPVHAVITNSTYDGLLYNTNWIKQ TLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAALSQASLIHIKGEYDEDTFNEAFMMHTSTS PSYPIVASIETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEEVDAAECWPVAPGEEWYGFNDAD HDHMFLDPVKVTILTPGMDEQGNMSDEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAY DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFDTLPEMMMTPHQAWQRQIRGDVETVTLDQL VGRVSANMILPYPPGVPLLMPGEMITEQSRAVLDFLLMLCSVGHHYPGFETDIHGAKQDEEGVYRVRVLKNI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 70 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_003363838.1 | lysine decarboxylase, constitutive | VFG1670 | Protein | 0.0 | 61 |
