Gene Information

Name : lpfB (ROD_18171)
Accession : YP_003365380.1
Strain : Citrobacter rodentium ICC168
Genome accession: NC_013716
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1936057 - 1936734 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence : 
ATGCGTTTATTCGTTGTTTGCATCGCGTCGTTGATGGTTTGCGCCATGAGCATGGCGACAGCGCAGGCTGGCGTCTCTGT
TGGCGGCACGCGCGTTATTTATGCCGGAGATAAAAAAGAGGCCTCTCTGAGCGTAACCAATCCCGATACGATCCCCTATT
TAATTCAGTCGTGGATTGAAATGCAGGACGCGAGTGCCGGAAAAGCGCCTTTTATTATTACACCGCCGCTTTATCGTTTA
GATAAAGGGCAGATAAACGTCATGCGCATTGTCCGCGCCGGTAATCTGCCGGAAGATAAAGAGTCGCTGTTCTGGCTGAA
TATTAAATCGATTCCCTCAACGGAGCGCAGAGATAATACCCTGCAAATAGCGATCAAAACGCGAATAAAACTGATTTATC
GTCCGGCCGCGCTCGGTCAGTCGAACCCTCTGGCGCAGGCGGATAAATTAAGCTGGAAGTCTGTCGGCAAATTTATTCAG
GTCACTAATCCTTCGCCATACTTTATTAATTTTAATGAGATCACCGTGGCCGGTAAACGGGTCGAAGAGGTGACATTTGT
GGCGCCGGGAAGCTCTGCCCGATTTGCCCTGCCGGATGGGGTAACGGGCGGTAATGTGACGTTCAAAATAATTAATGATT
ACGGCGGAATTAGCGACGCGCACCGGAGCGCCATTTAG

Protein sequence : 
MRLFVVCIASLMVCAMSMATAQAGVSVGGTRVIYAGDKKEASLSVTNPDTIPYLIQSWIEMQDASAGKAPFIITPPLYRL
DKGQINVMRIVRAGNLPEDKESLFWLNIKSIPSTERRDNTLQIAIKTRIKLIYRPAALGQSNPLAQADKLSWKSVGKFIQ
VTNPSPYFINFNEITVAGKRVEEVTFVAPGSSARFALPDGVTGGNVTFKIINDYGGISDAHRSAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 6e-37 45
phfC AAO17171.1 PhfC Virulence tcd island Protein 3e-39 42
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 5e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lpfB YP_003365380.1 fimbrial chaperone protein VFG0875 Protein 7e-37 43
lpfB YP_003365380.1 fimbrial chaperone protein VFG0445 Protein 8e-37 42
lpfB YP_003365380.1 fimbrial chaperone protein VFG1644 Protein 2e-35 41
lpfB YP_003365380.1 fimbrial chaperone protein VFG0911 Protein 5e-35 41