|
Name : lpfC (ROD_18161) Accession : YP_003365379.1 Strain : Citrobacter rodentium ICC168 Genome accession: NC_013716 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 1933519 - 1935966 bp Length : 2448 bp Strand : - Note : - DNA sequence : ATGATTACCAGCCTGCTGAATGAGGCGAGAGGGCGTGACTATTTTAATCCGGCGCTGCTGGAGAATAACCCAACCGCTGC GGATAATATCGATCTCTCTGCTTTTGAAACGGGACAACAGGCGCAGGGAACTTATCGCGTCGATATTATTCTCAACGGGG CGAATGTGGATACGCGTGAGATAGCCTTTTTCCCGGGGGAAGAGGGGGATCTTGAGCCGTGTCTCTCTGAAGCGCTGTTA CAGCGTTATGGCGTAAAAACCGCGTCCTACCCTGGGCTTATGGCGAAGGGAAAGTGCGCGGACCTGGCCGCCATTCCTCA GGCCTCCAGCGAGCTGTTATTTAGCGCGCAGAAACTGCTGCTCACTATTCCGCAGGCCGCCTTATCCGCGCAGGCGCGCG GCTATGTCGCCCCCGAATTGTGGGATGAGGGGATTAGCGCCGTGATGCTTAATTACAGCTTCAGTGGGGATCGTAGCCGG ACAAACGCGGATGGCGTAACAAGTAACAGTCAGTACGCCAGCCTGCGTCCTGGGATCAATGTCGGCCCGTGGCGGTTGCG AAACTATACGACCTGGAACCGCGACAGTCAGGGAAATGACAACTGGGATACGGTTTATACCTATCTTCAGCGCAATATTG TGCCGCTTAAAGCGCAGCTGGTGCTGGGCGACAGCGCCTCGCCCGCAGATATCTTTGACAGCATTCCGTTTCGCGGCGCG CAGCTTGCCTCTGATGACGAAATGCTGCCGGATTCGCTGAAAGGCTACGCACCGGTGGTGCGGGGGATCGCGCGAAGCCA TGCGCAGGTGATCATTCGGCAAAACGGCTATCAGATTTATCAGAGCTACGTGGCGCCAGGAGCATTCGAAATCAGCGATC TGTACCCGACCGGCGGCGCAGGCGATTTAGATGTCACCCTGAAAGAAGCCGACGGCGGCGAACAGCACTTTACGGTGCCG TTTGCATCCTTACCGGTGCTCCAGCGTGAAGGGCGCGTCAAATATGCCTTAACTGCCGGACGCTACCGTTCCTACGACAG CCGGGTGGCGCAGAGCGGGTTTGCGCAGGGAACGACGATTTACGGGCTGCCGGCGGCCGTTACCGTGTACGGCGGGCTTC AGGCGGCCGATGACTATCGCGCAGTGGCGGCTGGCGCAGGCAAGAATTTTGGCGTCGTCGGGGCGCTCTCTACCGACCTG ACCCGCTCCTGGTCGCAGCCGCGAAACGCGGCGAAGGCGCAGGGGCAATCCTGGCGTATTCGTTACAGTAAGAACAGCGT ACTGACCGGAACGCATTTTGCCATTGCCGGGTATCGCTACTCGACCCGTGACTTTTACGCGATGGAAGAAGTGTTTACTA CCCGGGGCGGCAGTAATACGCCTGCGCAGAAGCGACGTAACCGGATGGAGGCGAACGTCAGCCAGTCTCTCGGCCAGGGG CGCGGCGCGCTTTCGCTCAGCGCTGTACGGGAAGAGTACTGGAACAGAGAAAACCCCATGCAATCGTGGAGTGTCAGCTA TAACAATGCCTGGAACGGGGTAAGTTACGGTATTAGCTGGACGCAGAGTAAAAATAGCCTTTCCGGTACAGACAACCGTT ACGAAAAAGATCAGCAGATAGCCTTTAACGTCAGCGTTCCGCTGGAGGGCTTCATGGCAAACAGTTGGGCGCACTACAGT CTTAACGGCGGTCGCAATGCCGGGACAACGCACAGCGCAGGTCTGAGCGGTATGGCCCTGGCGGATAATGCGCTTAACTG GAACCTGCAACAGGGATACGGCAGCGACGGCGTGGGCTATACCGGCAGTCTCAACGCTGACTATAAAGGAACCTATGCCC AGGTCAGCAGCGGCTATAGCTACGACAGCAATATGCAACGGCTGAACTATGCGCTGGCGGGCGCGCTGCTGGCGCATGCT GACGGCGTCACGCTCTCCCAGCCGCTGGGGGAAACCAATGTTCTGATTAAAGCGCCGGGTGCGAACGGCGTTGGGGTGAA AAATCAGCGCGGCGTCAAAACTGATTTTCGCGGTTACACGGTTGCCGGCAACGTTTCGCCGTACCGTAACAATGATATCG GACTGGATACGTTATCCGTTCCGGCCAACGTTGAACTGGAATTGACCAATAAAAACGTAGTGCCGACCCGCGGGGCGGTG GTACGCGCAGAGTTTGTCGCCAGCGTGGGATTGCGCCTGTTGCTGACTTTGCATCGCGACAACGGGCGTCCCGTGCCGTT CGGCGCCAGGGTCGTCGTTCAAGGCGCTCAGGGACCCGGCTTTATTGTTGGCGATGACGGTCAGGTTTATCTGAGCGGTA TGCAGCCGCAGGGCGAACTTGATGTCGCCTGGGGGGATGACCCGCAGCAGCGCTGCACCGTGGAATATTCGTTTAAAGCG GCGGTCGGAAGTGGCGATATTATCACTGACGCTCGTCTTTGCCGCTAA Protein sequence : MITSLLNEARGRDYFNPALLENNPTAADNIDLSAFETGQQAQGTYRVDIILNGANVDTREIAFFPGEEGDLEPCLSEALL QRYGVKTASYPGLMAKGKCADLAAIPQASSELLFSAQKLLLTIPQAALSAQARGYVAPELWDEGISAVMLNYSFSGDRSR TNADGVTSNSQYASLRPGINVGPWRLRNYTTWNRDSQGNDNWDTVYTYLQRNIVPLKAQLVLGDSASPADIFDSIPFRGA QLASDDEMLPDSLKGYAPVVRGIARSHAQVIIRQNGYQIYQSYVAPGAFEISDLYPTGGAGDLDVTLKEADGGEQHFTVP FASLPVLQREGRVKYALTAGRYRSYDSRVAQSGFAQGTTIYGLPAAVTVYGGLQAADDYRAVAAGAGKNFGVVGALSTDL TRSWSQPRNAAKAQGQSWRIRYSKNSVLTGTHFAIAGYRYSTRDFYAMEEVFTTRGGSNTPAQKRRNRMEANVSQSLGQG RGALSLSAVREEYWNRENPMQSWSVSYNNAWNGVSYGISWTQSKNSLSGTDNRYEKDQQIAFNVSVPLEGFMANSWAHYS LNGGRNAGTTHSAGLSGMALADNALNWNLQQGYGSDGVGYTGSLNADYKGTYAQVSSGYSYDSNMQRLNYALAGALLAHA DGVTLSQPLGETNVLIKAPGANGVGVKNQRGVKTDFRGYTVAGNVSPYRNNDIGLDTLSVPANVELELTNKNVVPTRGAV VRAEFVASVGLRLLLTLHRDNGRPVPFGARVVVQGAQGPGFIVGDDGQVYLSGMQPQGELDVAWGDDPQQRCTVEYSFKA AVGSGDIITDARLCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 2e-136 | 42 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 4e-141 | 42 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 2e-133 | 41 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 2e-135 | 41 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 2e-135 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lpfC | YP_003365379.1 | fimbrial usher protein | VFG0446 | Protein | 2e-141 | 44 |
| lpfC | YP_003365379.1 | fimbrial usher protein | VFG0454 | Protein | 3e-157 | 43 |
| lpfC | YP_003365379.1 | fimbrial usher protein | VFG0876 | Protein | 2e-144 | 43 |
| lpfC | YP_003365379.1 | fimbrial usher protein | VFG1645 | Protein | 3e-141 | 42 |
| lpfC | YP_003365379.1 | fimbrial usher protein | VFG0912 | Protein | 1e-140 | 42 |
| lpfC | YP_003365379.1 | fimbrial usher protein | VFG0944 | Protein | 2e-136 | 41 |
